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Sample GSM2190967 Query DataSets for GSM2190967
Status Public on Jun 22, 2016
Title ChIP-seq from embryonic facial prominence (ENCLB079BXD)
Sample type SRA
 
Source name Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (11.5 days)
Organism Mus musculus
Characteristics antibody: H3K36me3
tissue_type: embryonic facial prominence
biomaterial_type: tissue
description: Craniofacial prominence from 88 embyronic 11.5 day mice
biosample encode accession: ENCBS468NAL (SAMN04284085)
age: 11.5 day
donor_id: ENCDO956IXV
dev stage: embryonic
Sex: pooled male and female
health state: healthy
lab: Len Pennacchio, LBNL
link: ENCBS468NAL at ENCODE; https://www.encodeproject.org/ENCBS468NAL/
link: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/
link: excision protocol; https://www.encodeproject.org/documents/631aa21c-8e48-467e-8cac-d40c875b3913/@@download/attachment/StandardTissueExcisionProtocol_02132017.pdf
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/4f73fbc3-956e-47ae-aa2d-41a7df552c81/@@download/attachment/Ren_ChIP_Library_Preparation_v060614.pdf
general protocol: https://www.encodeproject.org/documents/3125496b-c833-4414-bf5f-84dd633eb30d/@@download/attachment/Ren_Tissue_Fixation_and_Sonication_v060614.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR027DMG/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K36me3 ChIP-seq on embryonic 11.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR027DMG
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR068AQC
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB079BXD
size range: 300-500
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Jun 07, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL13112
Series (1)
GSE82363 ChIP-seq from embryonic facial prominence (ENCSR027DMG)
Relations
BioSample SAMN04284085
SRA SRX1832790
Named Annotation GSM2190967_ENCFF085GZQ_fold_change_over_control_mm10.bigWig
Named Annotation GSM2190967_ENCFF936RMC_signal_p-value_mm10.bigWig
Named Annotation GSM2190967_ENCFF403NVR_peaks_mm10.bed.gz

Supplementary file Size Download File type/resource
GSM2190967_ENCFF085GZQ_fold_change_over_control_mm10.bigWig 533.8 Mb (ftp)(http) BIGWIG
GSM2190967_ENCFF106FAL_peaks_mm10.bigBed 524.2 Kb (ftp)(http) BIGBED
GSM2190967_ENCFF403NVR_peaks_mm10.bed.gz 244.1 Kb (ftp)(http) BED
GSM2190967_ENCFF936RMC_signal_p-value_mm10.bigWig 212.9 Mb (ftp)(http) BIGWIG
GSM2190967_ENCLB079BXD_README.txt.gz 1.1 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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