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GEO accession:
Sample GSM2191245
Query DataSets for GSM2191245
Status
Public on Jun 22, 2016
Title
WGBS from heart (ENCLB054AXP)
Sample type
SRA
Source name
Mus musculus strain B6NCrl heart tissue mixed sex embryo (13.5 days)
Organism
Mus musculus
Characteristics
tissue_type: heart
biomaterial_type: tissue
description: Heart from embryonic 13.5 day mice
biosample encode accession: ENCBS814PLT (SAMN04284152)
age: 13.5 day
donor_id: ENCDO956IXV
dev stage: embryonic
Sex: pooled male and female
health state: healthy
lab: Len Pennacchio, LBNL
link: ENCBS814PLT at ENCODE;
https://www.encodeproject.org/ENCBS814PLT/
link: Derived from ENCODE donor ENCDO956IXV;
https://www.encodeproject.org/ENCDO956IXV/
link: excision protocol;
https://www.encodeproject.org/documents/631aa21c-8e48-467e-8cac-d40c875b3913/@@download/attachment/StandardTissueExcisionProtocol_02132017.pdf
Extracted molecule
genomic DNA
Extraction protocol
general protocol:
https://www.encodeproject.org/documents/665c8f16-3724-4ab7-aa29-688f396bcd4f/@@download/attachment/Ecker_Protocol_Summary.png
general protocol:
https://www.encodeproject.org/documents/862389c9-38b6-4e76-8b84-d82fb9a4c6cf/@@download/attachment/Ecker_Replication_Summary.png
general protocol:
https://www.encodeproject.org/documents/8f3cbe33-cf8f-4f26-b76b-d14a3b9721bd/@@download/attachment/Ecker_Methyl_Protocol_022315.pdf
general protocol:
https://www.encodeproject.org/documents/9d5f346e-88d3-45e2-b28a-2b26f537490f/@@download/attachment/Ecker_Methyl_protocol_v030114.pdf
Library strategy
Bisulfite-Seq
Library source
genomic
Library selection
RANDOM
Instrument model
Illumina HiSeq 2500
Description
https://www.encodeproject.org/experiments/ENCSR149GUT/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 13.5 day mouse heart
experiment encode accession: ENCSR149GUT
assay title: WGBS
assembly: mm10
encode release date: 2015-08-18
lab: Joe Ecker, Salk
library encode accession: ENCLB054AXP
size range: 180-500
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Jun 07, 2016
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL17021
Series (1)
GSE82469
WGBS from heart (ENCSR149GUT)
Relations
BioSample
SAMN04284152
SRA
SRX1833008
Supplementary file
Size
Download
File type/resource
GSM2191245_ENCLB054AXP_README.txt.gz
865 b
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data not provided for this record
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