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Sample GSM22 Query DataSets for GSM22
Status Public on Jan 24, 2001
Title NHGRI_SRS-5
Sample type RNA
 
Channel 1
Source name unknown
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name NHGRI_Melanoma_Ref
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description See http://www.nhgri.nih.gov/DIR/Microarray/Nature_paper.pdf
and http://www.nhgri.nih.gov/DIR/Microarray/Melanoma_Supplement/index.html
 
Submission date Jan 08, 2001
Last update date Jul 18, 2016
Contact name Michael Bittner
E-mail(s) mbittner@nhgri.nih.gov
Phone 301-496-7980
Fax 301-402-3241
URL http://www.nhgri.nih.gov/Intramural_research/People/bittnerm.html
Organization name NHGRI, NIH
Department Cancer Genetics Branch
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL7
Series (1)
GSE1 NHGRI_Melanoma_class

Data table header descriptions
ID_REF
CH1_TARGET_TOP Sample 1 (Red Channel) target location in image - top
CH1_TARGET_LT Sample 1 (Red Channel) target location in image - left
CH1_TARGET_BOT Sample 1 (Red Channel) target location in image - bottom
CH1_TARGET_RT Sample 1 (Red Channel) target location in image - right
CH1_RAW Sample 1 (Red Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_AREA Sample 1 (Red Channel) Area
CH1_BKD_MEAN Sample 1 (Red Channel) Mean Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_TARGET_TOP Sample 2 (Green Channel) target location in image - top
CH2_TARGET_LT Sample 2 Green Channel) target location in image - left
CH2_TARGET_BOT Sample 2 Green Channel) target location in image - bottom
CH2_TARGET_RT Sample 2 Green Channel) target location in image - right
CH2_RAW Sample 2 Green Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_AREA Sample 2 Green Channel) Area
CH2_BKD_MEAN Sample 2 Green Channel) Mean Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
UNION_AREA Union Area
RATIO Raw Ratio
VALUE log ratio of PRE_VALUE
CONF_LEVEL Confidence Level - fixed at 99%
CONF_LOW Confidence Interval - Lower Bound - Raw Ratio
CONF_UP Confidence Interval - Upper Bound - Raw Ratio
NORM_FACTOR M-value
CV Coefficient of variance
PRE_VALUE Calibrated Ratio

Data table
ID_REF CH1_TARGET_TOP CH1_TARGET_LT CH1_TARGET_BOT CH1_TARGET_RT CH1_RAW CH1_MEAN CH1_SD CH1_AREA CH1_BKD_MEAN CH1_BKD_SD CH2_TARGET_TOP CH2_TARGET_LT CH2_TARGET_BOT CH2_TARGET_RT CH2_RAW CH1_MEAN CH2_SD CH2_AREA CH2_BKD_MEAN CH2_BKD_SD UNION_AREA RATIO VALUE CONF_LEVEL CONF_LOW CONF_UP NORM_FACTOR CV PRE_VALUE
1 109 158 127 176 5075453 31061.3 12092.9 165 1266.5 278.4 109 158 127 176 3355186 17483.2 7497.6 143 3887.4 268.8 165 1.777 0.1908923 99.000 0.488 2.685 1.145 0.205 1.552
2 127 158 145 176 1933829 12142.1 3696.3 150 1287.3 279.0 127 158 145 176 2719340 14994.4 5394.7 138 3889.9 257.8 152 0.810 -0.1505813 99.000 0.488 2.685 1.145 0.205 0.707
3 145 158 163 176 99989 1337.4 540.8 36 1293.9 276.1 145 158 163 176 203142 1436.7 697.4 39 3909.2 252.7 46 0.931 -0.0899093 99.000 0.488 2.685 1.145 0.205 0.813
4 164 158 182 176 433160 2115.7 705.0 129 1295.0 276.1 164 158 182 176 788233 2281.9 884.2 123 3924.7 259.5 135 0.927 -0.0915153 99.000 0.488 2.685 1.145 0.205 0.810
5 182 158 200 176 758505 4544.7 1470.9 133 1290.0 268.6 182 158 200 176 1081739 4423.9 1706.0 126 3897.2 237.4 138 1.027 -0.0472083 99.000 0.488 2.685 1.145 0.205 0.897
6 200 158 218 176 281812 1091.3 417.7 88 1296.9 281.0 200 158 218 176 611198 1257.9 482.5 117 3921.7 246.5 126 0.868 -0.1203313 99.000 0.488 2.685 1.145 0.205 0.758
7 218 157 236 175 641697 4026.2 1013.8 128 1277.0 265.9 218 157 236 175 902904 3513.6 1159.1 121 3948.4 258.6 129 1.146 0.0004343 99.000 0.488 2.685 1.145 0.205 1.001
8 237 157 255 175 1605793 10822.1 3072.6 140 1251.6 257.9 237 157 255 175 2984433 18465.4 6984.9 130 3973.9 281.3 141 0.586 -0.2907303 99.000 0.488 2.685 1.145 0.205 0.512
9 255 157 273 175 1283057 8189.5 1914.6 144 1244.8 260.2 255 157 273 175 1900230 10004.5 2961.5 129 3967.7 288.4 144 0.819 -0.1456943 99.000 0.488 2.685 1.145 0.205 0.715
10 273 157 291 175 2879002 20704.7 8352.2 139 1272.4 282.5 273 157 291 175 3927215 26011.1 12454.8 126 3967.7 301.6 139 0.796 -0.1580153 99.000 0.488 2.685 1.145 0.205 0.695
11 291 157 309 175 842623 5735.4 1880.5 119 1228.4 251.5 291 157 309 175 2155018 13862.0 5064.1 118 3948.0 298.5 129 0.414 -0.4424933 99.000 0.488 2.685 1.145 0.205 0.361
12 310 157 328 175 2608725 17682.6 6287.6 146 1221.2 254.5 310 157 328 175 4136672 26049.1 11995.3 136 3926.8 290.0 146 0.679 -0.2269453 99.000 0.488 2.685 1.145 0.205 0.593
13 102 771 120 789 323782 2326.5 858.6 94 1192.9 262.1 102 771 120 789 549351 2147.9 1009.5 95 3823.3 271.9 100 1.083 -0.0241093 99.000 0.488 2.685 1.145 0.205 0.946
14 120 771 138 789 76227 1195.9 357.4 32 1186.2 258.4 120 771 138 789 161584 1230.7 510.1 27 3818.8 271.9 40 0.972 -0.0710923 99.000 0.488 2.685 1.145 0.205 0.849
15 139 771 157 789 1095265 8680.1 2776.6 116 1187.1 254.5 139 771 157 789 1360020 8435.3 3225.8 108 3817.2 267.0 119 1.029 -0.0462403 99.000 0.488 2.685 1.145 0.205 0.899
16 157 771 175 789 439627 2911.2 972.3 110 1197.5 255.2 157 771 175 789 1445377 9680.4 3433.2 107 3827.8 268.9 115 0.301 -0.5800443 99.000 0.488 2.685 1.145 0.205 0.263
17 175 771 193 789 366262 3183.5 1272.3 87 1229.3 267.5 175 771 193 789 537361 2627.7 1222.8 81 3846.5 272.8 91 1.212 0.0244863 99.000 0.488 2.685 1.145 0.205 1.058
18 194 771 212 789 2362637 17811.5 6656.8 132 1242.0 269.0 194 771 212 789 2961555 20021.4 8966.5 116 3862.2 276.8 132 0.890 -0.1095793 99.000 0.488 2.685 1.145 0.205 0.777
19 212 770 230 788 502558 4063.1 1725.5 100 1283.2 288.9 212 770 230 788 604306 2548.4 1276.1 87 3880.3 284.2 102 1.594 0.1436393 99.000 0.488 2.685 1.145 0.205 1.392
20 230 770 248 788 3343855 28572.5 10586.7 117 1283.4 289.8 230 770 248 788 5647335 46541.9 19019.3 114 3880.7 288.0 120 0.614 -0.2708353 99.000 0.488 2.685 1.145 0.205 0.536

Total number of rows: 8192

Table truncated, full table size 1281 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data provided as supplementary file
Processed data are available on Series record

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