NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2236601 Query DataSets for GSM2236601
Status Public on Feb 18, 2019
Title KCNK3 [3441-SG5]
Sample type SRA
 
Source name Lung
Organism Mus musculus
Characteristics strain: BL/6
gender: pooled male and female
genotype: Control (no UBC, but floxed KCNK3)
treatment: Hypoxic
Extracted molecule polyA RNA
Extraction protocol RNA was extracted from mice kidneys with a Qiagen RNEasy kit
RNA libraries were prepared for sequencing using standard Illumina protocols
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 3000
 
Description gender: M,M,F
Data processing alignment with STAR v 2.5.1b, controlling for unannotated, non-canonical and rare junctions
read count generation during STAR alignment using –quantmode GeneCounts option that works like HTSeq-Count in default mode
Genome_build: Mus musculus GRCm38.p4
Supplementary_files_format_and_content: txt files, raw read counts output from STAR alignment using option -–quantmode GeneCounts
 
Submission date Jul 15, 2016
Last update date May 15, 2019
Contact name James West
E-mail(s) j.west@vanderbilt.edu
Organization name Vanderbilt University
Department Medicine
Lab Allergy, Pulmonary and Critical Care
Street address 4200 E 9TH Ave, Box B133
City Nashville
State/province TN
ZIP/Postal code 37201
Country USA
 
Platform ID GPL21493
Series (1)
GSE84454 Effect of KCNK3 mutations on hypoxic mice lungs studied by RNASeq
Relations
BioSample SAMN05393177
SRA SRX1951052

Supplementary file Size Download File type/resource
GSM2236601_3441-SG-5ReadsPerGene.out.tab.gz 291.5 Kb (ftp)(http) TAB
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap