|
| Status |
Public on Feb 12, 2017 |
| Title |
Normal_58d_N5_re-analyzed |
| Sample type |
RNA |
| |
|
| Source name |
58 days old normal sea bass jaws
|
| Organism |
Dicentrarchus labrax |
| Characteristics |
condition: Normal jaw
age: 58 days
tissue: jaws
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Extracted according to QiAgen RNeasy MiniKit protocol for tissue samples
|
| Label |
Cyanine 3
|
| Label protocol |
Amplified and labeled according to Agilent One-Color Microarray-Based Gene Expression Analysis protocol
|
| |
|
| Hybridization protocol |
Hybridized according to Agilent One-Color Microarray-Based Gene Expression Analysis protocol
|
| Scan protocol |
Array was scanned according to standard Agilent protocol at a resolution of 5 microns modifying default setting to scan the slide twice at two different sensitivity settings (XDRHi 100% and XDRLo 10%)
|
| Description |
Pool of five (5) jaws dissected from normal individuals
|
| Data processing |
Data processed with FeatureExtraction v9.5. Normalization procedures were performed using R statistical software. Microarray data were cyclic lowess (CL) normalized across all arrays and CL-normalized data were further adjusted for the known between-experiments batch effects by implementing parametric Combat correction in R. Data are expressed in Log2.
|
| |
|
| Submission date |
Aug 01, 2016 |
| Last update date |
Feb 12, 2017 |
| Contact name |
Serena Ferraresso |
| E-mail(s) |
serena.ferraresso@unipd.it
|
| Phone |
+39 049 8272506
|
| Organization name |
University of Padova
|
| Department |
Dept of Comparative Biomedicine and Food Science
|
| Street address |
Viale dell'Università
|
| City |
Legnaro (PD) |
| State/province |
Padova |
| ZIP/Postal code |
35020 |
| Country |
Italy |
| |
|
| Platform ID |
GPL9663 |
| Series (2) |
| GSE85054 |
An integrated genomic approach for the study of mandibular prognathism in the European seabass (Dicentrarchus labrax) II |
| GSE85056 |
An integrated genomic approach for the study of mandibular prognathism in the European seabass |
|
| Relations |
| Reanalysis of |
GSM470064 |
