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Status |
Public on Aug 10, 2016 |
Title |
Huh1_siControl_4 |
Sample type |
RNA |
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Source name |
Huh1_siControl_1% O2 for 24hrs
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Organism |
Homo sapiens |
Characteristics |
cell line: Huh1 cell type: Hepatocellular Carcinoma Cells transfected with: control siRNA
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Treatment protocol |
Using RNAiMAX (Invitrogen) reagents, Huh-1 cells were reverse-transfected with control siRNA or siLSD1. After 48hrs, cells were incubated under 1% O2 for 24hrs.
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Growth protocol |
Huh-1 cells were maintained in Dulbecco’s modified Eagle medium (DMEM; Gibco BRL, Grand Island, NY). Media was supplemented with heat-inactivated 10% fetal bovine serum (GIBCO BRL) and 1× Antibiotic-Antimycotic (GIBCO BRL). Cells were cultured at 37℃ in a humidified incubator under 5% CO2. Hypoxic culture conditions were constructed with O2/CO2 incubator (1%O2, 5% CO2 and 92%-94% N2, MCO-5M, Sanyo, Japan)
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Extracted molecule |
total RNA |
Extraction protocol |
Total RNA extraction was perforemd using QIAGEN RNeasy mini kit according to manufacturer's instruction. Total RNA integrity was determined with ExperionTM RNA StdSens (BIO-RAD).
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Label |
Biotin
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Label protocol |
Illumina TotalPrep RNA Amplification kit (Applied Biosystem/Ambion, Austin, TX, USA) was used to generate biotin-UTP labeled cRNA according to manufacturer’s instructions
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Hybridization protocol |
Labeled cRNA (750ng) was hybridized to HumanHT-12 v4 chips at 58℃ for 18 hours.
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Scan protocol |
After hybridizing procedures, chips were scanned using a BeadArray Reader and BeadScan software (Illumina).
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Description |
Gene expression analysis of Huh1 cell line under transfected with control siRNA. At 48hrs after the control siRNA trasfection to Huh-1 cells, the cells were incubated in 1% O2 for 24 hrs. Biological replication #2, Technical replicatipon #2
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Data processing |
Data extraction and normalization were elevated by BeadStudio software (v. 3.1.1.0, Illumina); content Descriptor; HumanHT-12_V4_0_R2_15002873_B.bgx
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Submission date |
Aug 09, 2016 |
Last update date |
Aug 10, 2016 |
Contact name |
Yang Suk-Jin |
E-mail(s) |
sukjini@kribb.re.kr
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Organization name |
KRIBB (Korea Research Institute of Bioscience and Biotechnology)
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Street address |
125 Gwahak-ro, Yuseong-gu
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City |
Daejeon |
ZIP/Postal code |
34141 |
Country |
South Korea |
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Platform ID |
GPL10904 |
Series (1) |
GSE85345 |
Gene expression profiling in LSD1 depleted Huh-1 cell line under hypoxic condition. |
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