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Sample GSM2267371 Query DataSets for GSM2267371
Status Public on Sep 28, 2016
Title T990489
Sample type genomic
 
Source name Gastric Primary Tissue
Organism Homo sapiens
Characteristics tissue subtype: Gastric primary tumor tissue
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated using Qiagen Blood & Cell Culture DNA Mini Kit according to the manufacturer's protocol
Label Cy3 and Cy5
Label protocol Standard Illumina protocol - Infinium HD Methylation protocol Hybridization Protocol: Standard Illumina protocol - Infinium HD Methylation protocol
 
Hybridization protocol Hybridization Protocol: Standard Illumina protocol - Infinium HD Methylation protocol
Scan protocol BeadChips were scanned using the iScan system
Description X990489T
Data processing Methylation β-values were calculated and background corrected using the methylumi R BioConductor package.
Normalization was performed using the BMIQ method (watermelon package in R).
 
Submission date Aug 11, 2016
Last update date Sep 28, 2016
Contact name Aditi Qamra
E-mail(s) qamraa99@gis.a-star.edu.sg
Organization name GIS
Street address 60 Biopolis Street, Genome, #02-01
City Singapore
ZIP/Postal code 138672
Country Singapore
 
Platform ID GPL13534
Series (2)
GSE85464 Epigenomic Profiling of Primary Gastric Adenocarcinoma Reveals Super-enhancer Heterogeneity [methylation]
GSE85467 Epigenomic Profiling of Primary Gastric Adenocarcinoma Reveals Super-enhancer Heterogeneity

Data table header descriptions
ID_REF
VALUE normalized Beta

Data table
ID_REF VALUE
cg00000029 0.206485013791454
cg00000108 0.909265170231306
cg00000109 0.936712598778198
cg00000165 0.15779011921298
cg00000236 0.894685105535648
cg00000289 0.751125542021003
cg00000292 0.852901306526617
cg00000321 0.105444723211896
cg00000363 0.227009039985568
cg00000622 0.025047616347388
cg00000658 0.864736674802096
cg00000714 0.0592614978113895
cg00000721 0.964372007472831
cg00000734 0.0227691482248336
cg00000769 0.0315259641210928
cg00000807 0.864080556977169
cg00000884 0.909944588692939
cg00000905 0.0422494473623062
cg00000924 0.635094546607075
cg00000948 0.96830338796753

Total number of rows: 484155

Table truncated, full table size 13813 Kbytes.




Supplementary file Size Download File type/resource
GSM2267371_101032570172_R06C02_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM2267371_101032570172_R06C02_Red.idat.gz 4.0 Mb (ftp)(http) IDAT
Processed data included within Sample table

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