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Sample GSM2267373 Query DataSets for GSM2267373
Status Public on Sep 28, 2016
Title T76629543
Sample type genomic
 
Source name Gastric Primary Tissue
Organism Homo sapiens
Characteristics tissue subtype: Gastric primary tumor tissue
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated using Qiagen Blood & Cell Culture DNA Mini Kit according to the manufacturer's protocol
Label Cy3 and Cy5
Label protocol Standard Illumina protocol - Infinium HD Methylation protocol Hybridization Protocol: Standard Illumina protocol - Infinium HD Methylation protocol
 
Hybridization protocol Hybridization Protocol: Standard Illumina protocol - Infinium HD Methylation protocol
Scan protocol BeadChips were scanned using the iScan system
Description X76629543T
Data processing Methylation β-values were calculated and background corrected using the methylumi R BioConductor package.
Normalization was performed using the BMIQ method (watermelon package in R).
 
Submission date Aug 11, 2016
Last update date Sep 28, 2016
Contact name Aditi Qamra
E-mail(s) qamraa99@gis.a-star.edu.sg
Organization name GIS
Street address 60 Biopolis Street, Genome, #02-01
City Singapore
ZIP/Postal code 138672
Country Singapore
 
Platform ID GPL13534
Series (2)
GSE85464 Epigenomic Profiling of Primary Gastric Adenocarcinoma Reveals Super-enhancer Heterogeneity [methylation]
GSE85467 Epigenomic Profiling of Primary Gastric Adenocarcinoma Reveals Super-enhancer Heterogeneity

Data table header descriptions
ID_REF
VALUE normalized Beta

Data table
ID_REF VALUE
cg00000029 0.0398067632838797
cg00000108 0.982161142588722
cg00000109 0.914980431199413
cg00000165 0.141328665926912
cg00000236 0.943656265092188
cg00000289 0.577188283321578
cg00000292 0.830953543800212
cg00000321 0.332848795143163
cg00000363 0.0781026257581998
cg00000622 0.0237716842385006
cg00000658 0.923132363683888
cg00000714 0.0623762738934975
cg00000721 0.979547039523474
cg00000734 0.0203915019483965
cg00000769 0.0464378490411878
cg00000807 0.878889594413999
cg00000884 0.908854222594227
cg00000905 0.0610634736766315
cg00000924 0.133788151381544
cg00000948 0.967377973961069

Total number of rows: 484155

Table truncated, full table size 13833 Kbytes.




Supplementary file Size Download File type/resource
GSM2267373_101032570172_R04C02_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM2267373_101032570172_R04C02_Red.idat.gz 4.0 Mb (ftp)(http) IDAT
Processed data included within Sample table

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