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Sample GSM2267374 Query DataSets for GSM2267374
Status Public on Sep 28, 2016
Title N76629543
Sample type genomic
 
Source name Gastric Primary Tissue
Organism Homo sapiens
Characteristics tissue subtype: Gastric primary non-malignant tissue
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated using Qiagen Blood & Cell Culture DNA Mini Kit according to the manufacturer's protocol
Label Cy3 and Cy5
Label protocol Standard Illumina protocol - Infinium HD Methylation protocol Hybridization Protocol: Standard Illumina protocol - Infinium HD Methylation protocol
 
Hybridization protocol Hybridization Protocol: Standard Illumina protocol - Infinium HD Methylation protocol
Scan protocol BeadChips were scanned using the iScan system
Description X76629543N
Data processing Methylation β-values were calculated and background corrected using the methylumi R BioConductor package.
Normalization was performed using the BMIQ method (watermelon package in R).
 
Submission date Aug 11, 2016
Last update date Sep 28, 2016
Contact name Aditi Qamra
E-mail(s) qamraa99@gis.a-star.edu.sg
Organization name GIS
Street address 60 Biopolis Street, Genome, #02-01
City Singapore
ZIP/Postal code 138672
Country Singapore
 
Platform ID GPL13534
Series (2)
GSE85464 Epigenomic Profiling of Primary Gastric Adenocarcinoma Reveals Super-enhancer Heterogeneity [methylation]
GSE85467 Epigenomic Profiling of Primary Gastric Adenocarcinoma Reveals Super-enhancer Heterogeneity

Data table header descriptions
ID_REF
VALUE normalized Beta

Data table
ID_REF VALUE
cg00000029 0.351777576115596
cg00000108 0.988653188527212
cg00000109 0.938264933552216
cg00000165 0.200349835630285
cg00000236 0.917803437783359
cg00000289 0.759537801242626
cg00000292 0.702865873794872
cg00000321 0.374684762171638
cg00000363 0.207425879695752
cg00000622 0.0199629419152907
cg00000658 0.893547500524988
cg00000714 0.0891770312939593
cg00000721 0.972922508317917
cg00000734 0.0248259035789516
cg00000769 0.0335413592771079
cg00000807 0.832841147738162
cg00000884 0.939681175819915
cg00000905 0.0500379626589781
cg00000924 0.665688172487706
cg00000948 0.972771829283002

Total number of rows: 484155

Table truncated, full table size 13794 Kbytes.




Supplementary file Size Download File type/resource
GSM2267374_101032570172_R03C02_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM2267374_101032570172_R03C02_Red.idat.gz 4.0 Mb (ftp)(http) IDAT
Processed data included within Sample table

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