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Sample GSM2267377 Query DataSets for GSM2267377
Status Public on Sep 28, 2016
Title T2000085
Sample type genomic
 
Source name Gastric Primary Tissue
Organism Homo sapiens
Characteristics tissue subtype: Gastric primary tumor tissue
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated using Qiagen Blood & Cell Culture DNA Mini Kit according to the manufacturer's protocol
Label Cy3 and Cy5
Label protocol Standard Illumina protocol - Infinium HD Methylation protocol Hybridization Protocol: Standard Illumina protocol - Infinium HD Methylation protocol
 
Hybridization protocol Hybridization Protocol: Standard Illumina protocol - Infinium HD Methylation protocol
Scan protocol BeadChips were scanned using the iScan system
Description X2000085T
Data processing Methylation β-values were calculated and background corrected using the methylumi R BioConductor package.
Normalization was performed using the BMIQ method (watermelon package in R).
 
Submission date Aug 11, 2016
Last update date Sep 28, 2016
Contact name Aditi Qamra
E-mail(s) qamraa99@gis.a-star.edu.sg
Organization name GIS
Street address 60 Biopolis Street, Genome, #02-01
City Singapore
ZIP/Postal code 138672
Country Singapore
 
Platform ID GPL13534
Series (2)
GSE85464 Epigenomic Profiling of Primary Gastric Adenocarcinoma Reveals Super-enhancer Heterogeneity [methylation]
GSE85467 Epigenomic Profiling of Primary Gastric Adenocarcinoma Reveals Super-enhancer Heterogeneity

Data table header descriptions
ID_REF
VALUE normalized Beta

Data table
ID_REF VALUE
cg00000029 0.449853633564331
cg00000108 0.991232235788774
cg00000109 0.927915218567334
cg00000165 0.128484113367729
cg00000236 0.90549331009401
cg00000289 0.700630676596612
cg00000292 0.818461811391677
cg00000321 0.323721130935609
cg00000363 0.231584117886141
cg00000622 0.0211551095157023
cg00000658 0.871138142696161
cg00000714 0.0997648098558461
cg00000721 0.981334038654821
cg00000734 0.0212011234693131
cg00000769 0.0398809010985904
cg00000807 0.853101402212885
cg00000884 0.946537773378751
cg00000905 0.0597061499746935
cg00000924 0.664665569703562
cg00000948 0.942856276030378

Total number of rows: 484155

Table truncated, full table size 13806 Kbytes.




Supplementary file Size Download File type/resource
GSM2267377_101032570172_R04C01_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM2267377_101032570172_R04C01_Red.idat.gz 4.0 Mb (ftp)(http) IDAT
Processed data included within Sample table

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