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Sample GSM2267383 Query DataSets for GSM2267383
Status Public on Sep 28, 2016
Title T2001206
Sample type genomic
 
Source name Gastric Primary Tissue
Organism Homo sapiens
Characteristics tissue subtype: Gastric primary tumor tissue
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated using Qiagen Blood & Cell Culture DNA Mini Kit according to the manufacturer's protocol
Label Cy3 and Cy5
Label protocol Standard Illumina protocol - Infinium HD Methylation protocol Hybridization Protocol: Standard Illumina protocol - Infinium HD Methylation protocol
 
Hybridization protocol Hybridization Protocol: Standard Illumina protocol - Infinium HD Methylation protocol
Scan protocol BeadChips were scanned using the iScan system
Description X2001206T
Data processing Methylation β-values were calculated and background corrected using the methylumi R BioConductor package.
Normalization was performed using the BMIQ method (watermelon package in R).
 
Submission date Aug 11, 2016
Last update date Sep 28, 2016
Contact name Aditi Qamra
E-mail(s) qamraa99@gis.a-star.edu.sg
Organization name GIS
Street address 60 Biopolis Street, Genome, #02-01
City Singapore
ZIP/Postal code 138672
Country Singapore
 
Platform ID GPL13534
Series (2)
GSE85464 Epigenomic Profiling of Primary Gastric Adenocarcinoma Reveals Super-enhancer Heterogeneity [methylation]
GSE85467 Epigenomic Profiling of Primary Gastric Adenocarcinoma Reveals Super-enhancer Heterogeneity

Data table header descriptions
ID_REF
VALUE normalized Beta

Data table
ID_REF VALUE
cg00000029 0.378915889925884
cg00000108 0.986591227101626
cg00000109 0.935403023492276
cg00000165 0.300203757020831
cg00000236 0.964409333596295
cg00000289 0.685862095364694
cg00000292 0.760717861317122
cg00000321 0.255131774572314
cg00000363 0.341886468483321
cg00000622 0.0217451270674563
cg00000658 0.913852398657845
cg00000714 0.108214464576706
cg00000721 0.93514663986297
cg00000734 0.0228435604286344
cg00000769 0.0289015466046521
cg00000807 0.843255584373795
cg00000884 0.956873237428519
cg00000905 0.0579013512431317
cg00000924 0.657704266790279
cg00000948 0.949138527144034

Total number of rows: 484155

Table truncated, full table size 13783 Kbytes.




Supplementary file Size Download File type/resource
GSM2267383_101032570172_R06C01_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM2267383_101032570172_R06C01_Red.idat.gz 4.0 Mb (ftp)(http) IDAT
Processed data included within Sample table

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