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Sample GSM2267395 Query DataSets for GSM2267395
Status Public on Sep 28, 2016
Title T20021007
Sample type genomic
 
Source name Gastric Primary Tissue
Organism Homo sapiens
Characteristics tissue subtype: Gastric primary tumor tissue
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated using Qiagen Blood & Cell Culture DNA Mini Kit according to the manufacturer's protocol
Label Cy3 and Cy5
Label protocol Standard Illumina protocol - Infinium HD Methylation protocol Hybridization Protocol: Standard Illumina protocol - Infinium HD Methylation protocol
 
Hybridization protocol Hybridization Protocol: Standard Illumina protocol - Infinium HD Methylation protocol
Scan protocol BeadChips were scanned using the iScan system
Description X20021007T
Data processing Methylation β-values were calculated and background corrected using the methylumi R BioConductor package.
Normalization was performed using the BMIQ method (watermelon package in R).
 
Submission date Aug 11, 2016
Last update date Sep 28, 2016
Contact name Aditi Qamra
E-mail(s) qamraa99@gis.a-star.edu.sg
Organization name GIS
Street address 60 Biopolis Street, Genome, #02-01
City Singapore
ZIP/Postal code 138672
Country Singapore
 
Platform ID GPL13534
Series (2)
GSE85464 Epigenomic Profiling of Primary Gastric Adenocarcinoma Reveals Super-enhancer Heterogeneity [methylation]
GSE85467 Epigenomic Profiling of Primary Gastric Adenocarcinoma Reveals Super-enhancer Heterogeneity

Data table header descriptions
ID_REF
VALUE normalized Beta

Data table
ID_REF VALUE
cg00000029 0.497059539911759
cg00000108 0.988617483886785
cg00000109 0.910389834040962
cg00000165 0.151252390648459
cg00000236 0.959122438168044
cg00000289 0.733981049175031
cg00000292 0.706994788251893
cg00000321 0.216356176496508
cg00000363 0.345821746929494
cg00000622 0.0197914768904118
cg00000658 0.907586206378133
cg00000714 0.170991429280163
cg00000721 0.960684736682424
cg00000734 0.0302161279169265
cg00000769 0.0318101308698177
cg00000807 0.765016197243757
cg00000884 0.944786497559823
cg00000905 0.039811596124623
cg00000924 0.687019998713988
cg00000948 0.87725041387131

Total number of rows: 484155

Table truncated, full table size 13800 Kbytes.




Supplementary file Size Download File type/resource
GSM2267395_101178130019_R02C02_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM2267395_101178130019_R02C02_Red.idat.gz 4.0 Mb (ftp)(http) IDAT
Processed data included within Sample table

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