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Sample GSM2267396 Query DataSets for GSM2267396
Status Public on Sep 28, 2016
Title N20021007
Sample type genomic
 
Source name Gastric Primary Tissue
Organism Homo sapiens
Characteristics tissue subtype: Gastric primary non-malignant tissue
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated using Qiagen Blood & Cell Culture DNA Mini Kit according to the manufacturer's protocol
Label Cy3 and Cy5
Label protocol Standard Illumina protocol - Infinium HD Methylation protocol Hybridization Protocol: Standard Illumina protocol - Infinium HD Methylation protocol
 
Hybridization protocol Hybridization Protocol: Standard Illumina protocol - Infinium HD Methylation protocol
Scan protocol BeadChips were scanned using the iScan system
Description X20021007N
Data processing Methylation β-values were calculated and background corrected using the methylumi R BioConductor package.
Normalization was performed using the BMIQ method (watermelon package in R).
 
Submission date Aug 11, 2016
Last update date Sep 28, 2016
Contact name Aditi Qamra
E-mail(s) qamraa99@gis.a-star.edu.sg
Organization name GIS
Street address 60 Biopolis Street, Genome, #02-01
City Singapore
ZIP/Postal code 138672
Country Singapore
 
Platform ID GPL13534
Series (2)
GSE85464 Epigenomic Profiling of Primary Gastric Adenocarcinoma Reveals Super-enhancer Heterogeneity [methylation]
GSE85467 Epigenomic Profiling of Primary Gastric Adenocarcinoma Reveals Super-enhancer Heterogeneity

Data table header descriptions
ID_REF
VALUE normalized Beta

Data table
ID_REF VALUE
cg00000029 0.359583806162804
cg00000108 0.986603983987597
cg00000109 0.894737648503788
cg00000165 0.144806501148458
cg00000236 0.960108330719422
cg00000289 0.797755937067656
cg00000292 0.63690853625995
cg00000321 0.20762962101273
cg00000363 0.180719859723823
cg00000622 0.018722673402121
cg00000658 0.875873894101248
cg00000714 0.100368796702549
cg00000721 0.943563947534894
cg00000734 0.0365574086671576
cg00000769 0.0293843077750556
cg00000807 0.817604284665501
cg00000884 0.938977414548099
cg00000905 0.0394325045247091
cg00000924 0.720811164029119
cg00000948 0.956943912407405

Total number of rows: 484155

Table truncated, full table size 13805 Kbytes.




Supplementary file Size Download File type/resource
GSM2267396_101178130019_R01C02_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM2267396_101178130019_R01C02_Red.idat.gz 4.0 Mb (ftp)(http) IDAT
Processed data included within Sample table

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