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Sample GSM2267397 Query DataSets for GSM2267397
Status Public on Sep 28, 2016
Title T20020720
Sample type genomic
 
Source name Gastric Primary Tissue
Organism Homo sapiens
Characteristics tissue subtype: Gastric primary tumor tissue
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated using Qiagen Blood & Cell Culture DNA Mini Kit according to the manufacturer's protocol
Label Cy3 and Cy5
Label protocol Standard Illumina protocol - Infinium HD Methylation protocol Hybridization Protocol: Standard Illumina protocol - Infinium HD Methylation protocol
 
Hybridization protocol Hybridization Protocol: Standard Illumina protocol - Infinium HD Methylation protocol
Scan protocol BeadChips were scanned using the iScan system
Description X20020720T
Data processing Methylation β-values were calculated and background corrected using the methylumi R BioConductor package.
Normalization was performed using the BMIQ method (watermelon package in R).
 
Submission date Aug 11, 2016
Last update date Sep 28, 2016
Contact name Aditi Qamra
E-mail(s) qamraa99@gis.a-star.edu.sg
Organization name GIS
Street address 60 Biopolis Street, Genome, #02-01
City Singapore
ZIP/Postal code 138672
Country Singapore
 
Platform ID GPL13534
Series (2)
GSE85464 Epigenomic Profiling of Primary Gastric Adenocarcinoma Reveals Super-enhancer Heterogeneity [methylation]
GSE85467 Epigenomic Profiling of Primary Gastric Adenocarcinoma Reveals Super-enhancer Heterogeneity

Data table header descriptions
ID_REF
VALUE normalized Beta

Data table
ID_REF VALUE
cg00000029 0.0699253872543514
cg00000108 0.988368615067992
cg00000109 0.914491503988855
cg00000165 0.321599829886224
cg00000236 0.972784642218182
cg00000289 0.750174500585351
cg00000292 0.713903325803754
cg00000321 0.0810965231872178
cg00000363 0.170858268590374
cg00000622 0.0151223239179287
cg00000658 0.884661097678355
cg00000714 0.0428651257864253
cg00000721 0.984321336547852
cg00000734 0.0165297781117939
cg00000769 0.0239946753097998
cg00000807 0.912287997598869
cg00000884 0.919209987481617
cg00000905 0.0460041352699956
cg00000924 0.479201058728698
cg00000948 0.796459124183291

Total number of rows: 484155

Table truncated, full table size 13826 Kbytes.




Supplementary file Size Download File type/resource
GSM2267397_101178130019_R06C01_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM2267397_101178130019_R06C01_Red.idat.gz 4.0 Mb (ftp)(http) IDAT
Processed data included within Sample table

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