|
Status |
Public on Oct 05, 2007 |
Title |
Stroma tumor (TS818) |
Sample type |
RNA |
|
|
Source name |
stroma
|
Organism |
Homo sapiens |
Characteristics |
tumor
|
Treatment protocol |
RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
|
Growth protocol |
RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
|
Label |
biotin
|
Label protocol |
Biotynylated cRNA were prepared according to the standard affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
|
|
|
Hybridization protocol |
Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45c on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the affymetrix fludics station 400
|
Scan protocol |
GeneChips were scanned using the Hewlett-Packard GeneArray Scanncer G2500A
|
Description |
expression of breast tissue
|
Data processing |
dCHIP with default settings
|
|
|
Submission date |
Sep 06, 2007 |
Last update date |
Aug 28, 2018 |
Contact name |
Andrea Richardson |
E-mail(s) |
arichardson@partners.org
|
Phone |
617-732-4764
|
Organization name |
Brigham and Women's Hospital
|
Department |
Pathology
|
Street address |
75 Francis Street
|
City |
Boston |
State/province |
MA |
ZIP/Postal code |
02115 |
Country |
USA |
|
|
Platform ID |
GPL570 |
Series (1) |
GSE8977 |
Bone-marrow-derived mesenchymal stem cells promote breast cancer metastasis |
|
Relations |
Reanalyzed by |
GSE20125 |
Reanalyzed by |
GSE64985 |
Reanalyzed by |
GSE119087 |