NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM228494 Query DataSets for GSM228494
Status Public on Jan 01, 2009
Title No R1881, 1 µM TSA
Sample type RNA
 
Source name LNCaP Cells
Organism Homo sapiens
Characteristics No R1881, 1 µM TSA
Treatment protocol As per title for 16 hours, all in the presence of cyclohexamide
Growth protocol LNCaP cells were grown in charcoal stripped medium
Extracted molecule total RNA
Extraction protocol RNAeasy Kit
Label biotin
Label protocol According to standard Affymetrix protocol.
 
Hybridization protocol According to standard Affymetrix protocol.
Scan protocol According to standard Affymetrix protocol.
Description No R1881, 1 µM TSA
Data processing Data was analyzed using GeneSpring. Gene with intensity >250 either unstimulated or stimulated with R1881 was included for analysis. Data was normaled by medium of the chip. No per gene normalization was performed.
 
Submission date Sep 10, 2007
Last update date Aug 14, 2011
Contact name Yu Chen
E-mail(s) cheny1@mskcc.org
Phone 646-888-3356
Organization name Memorial Sloan Kettering Cancer Center
Department Human Oncology and Pathogenesis Program
Lab Chen
Street address 1275 York Ave, Box 20
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platform ID GPL571
Series (1)
GSE9000 Effect of HDAC inhibitors on expression of androgen induced genes

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 235.974 P 0.000389797
AFFX-BioB-M_at 394.403 P 7.00668e-05
AFFX-BioB-3_at 199.934 P 0.000195116
AFFX-BioC-5_at 789.801 P 7.00668e-05
AFFX-BioC-3_at 920.37 P 4.42873e-05
AFFX-BioDn-5_at 1718.15 P 5.16732e-05
AFFX-BioDn-3_at 3691.11 P 0.000195116
AFFX-CreX-5_at 10187.9 P 5.16732e-05
AFFX-CreX-3_at 11239.2 P 4.42873e-05
AFFX-DapX-5_at 7.62879 A 0.275146
AFFX-DapX-M_at 17.3388 A 0.131361
AFFX-DapX-3_at 1.26738 A 0.984817
AFFX-LysX-5_at 0.811238 A 0.60308
AFFX-LysX-M_at 1.27265 A 0.910541
AFFX-LysX-3_at 3.32421 A 0.52976
AFFX-PheX-5_at 5.96254 A 0.760937
AFFX-PheX-M_at 0.977707 A 0.949771
AFFX-PheX-3_at 8.12134 A 0.631562
AFFX-ThrX-5_at 2.4008 A 0.891021
AFFX-ThrX-M_at 11.1932 A 0.165861

Total number of rows: 22277

Table truncated, full table size 678 Kbytes.




Supplementary file Size Download File type/resource
GSM228494.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM228494.CHP.gz 5.9 Mb (ftp)(http) CHP
GSM228494.EXP.gz 364 b (ftp)(http) EXP
Processed data included within Sample table
Processed data provided as supplementary file
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap