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Sample GSM230144 Query DataSets for GSM230144
Status Public on Sep 22, 2007
Title PSA-NCAM-positive neuronal precursor cells from adult mouse brain
Sample type SAGE
Anchor NlaIII
Tag Count 36093
Tag Length 11
 
Source name PSA-NCAM-positive neuronal precursor cells from the adult subventricular zone
Organism Mus musculus
Characteristics strain: C57BL/6J mice
age: 4-6 week
gender: male
Biomaterial provider Harold Cremer, IBDM, Marseille
Treatment protocol PSA-NCAM positive cells were isolated from dissected subventricular zone (SVZ) tissue using FACS as described in Pennartz et al., Mol Cell Neurosci. 2004 Apr;25(4):692-706 and PhD thesis "Gene expression analysis of neuronal precursors
from adult mouse brain and differential screen for
neural stem cell markers" , University of Cologne, Germany, http://deposit.ddb.de/cgi-bin/dokserv?idn=973392754
Extracted molecule total RNA
Extraction protocol RNeasy Mini Lit (Qiagen, Hilden)
 
Description No amplification of RNA samples. No cultivation steps, isolated cells were processed immediately.
MicroSAGE Detailed Protocol with minor modifications was performed as described in Pennartz et al., Mol Cell Neurosci. 2004 Apr;25(4):692-706 and PhD thesis "Gene expression analysis of neuronal precursors
from adult mouse brain and differential screen for
neural stem cell markers" , University of Cologne, Germany, http://deposit.ddb.de/cgi-bin/dokserv?idn=973392754
Data processing SAGE data analysis was carried out using the Memorec SAGE Analysis Package (Memorec Biotec GmbH, Cologne, Germany).
 
Submission date Sep 18, 2007
Last update date Nov 19, 2008
Contact name Sandra Juliane Pennartz
E-mail(s) sandrap@miltenyibiotec.de
Organization name Miltenyi Biotec GmbH
Department Research & Development
Street address Friedrich-Ebert-Strasse 68
City Bergisch Gladbach
ZIP/Postal code D-51429
Country Germany
 
Platform ID GPL5885
Series (1)
GSE9081 Purification of neuronal precursors from the adult mouse brain: a comprehensive gene expression analysis

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
TCCCCGTACAT 1720 47654.67
TCCCTATTAAG 746 20668.83
ATACTGACATT 484 13409.80
ATAATACATAA 459 12717.15
GTGGCTCACAA 312 8644.34
ATGACTGATAG 232 6427.84
TCCCGTACATC 224 6206.19
TGGGTTGTCTA 137 3795.75
ATTGTTTATGA 135 3740.34
GCAGGCACTCA 110 3047.68
GCTGCCCTCCA 107 2964.56
GCTGCCCTAGA 101 2798.33
TTGGTGAAGGA 96 2659.80
ATGTCTCAAAG 94 2604.38
AGCAATTCAAA 89 2465.85
CTAGTCTTTGT 87 2410.44
AGCAGTCCCCT 84 2327.32
TGGATCAGTCT 78 2161.08
TCCCCCGTACA 77 2133.38
GATTCCGTGAG 70 1939.43

Total number of rows: 16180

Table truncated, full table size 317 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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