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| Status |
Public on Sep 09, 2016 |
| Title |
SC-1-15 |
| Sample type |
SRA |
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| Source name |
untreated embryos
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| Organism |
Fundulus heteroclitus |
| Characteristics |
age: 1-15 dpf
population: Scorton Creek
tissue: embryos
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| Extracted molecule |
total RNA |
| Extraction protocol |
shotgun cDNA library - ESTs sequenced
Total RNA was isolated using STAT60 method.
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
454 GS FLX Titanium |
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| Data processing |
Data was assembled using Newbler 2.5 (Roche, Indianapolis, IN).
Supplementary_files_format_and_content: MWG-454AllContigs.fna: fasta, assembly of samples 1 through 4.
Supplementary_files_format_and_content: R1-R2-454AllContigs.fna: fasta, assembly of samples 5 and 6.
Supplementary_files_format_and_content: 454_Counts.xlsx: spreadsheet of mapped counts
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| Submission date |
Sep 08, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Sibel Karchner |
| E-mail(s) |
skarchner@whoi.edu
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| Organization name |
Woods Hole Oceanographic Institution
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| Department |
Biology
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| Street address |
45 Water St
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| City |
Woods Hole |
| State/province |
MA |
| ZIP/Postal code |
02543 |
| Country |
USA |
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| Platform ID |
GPL22406 |
| Series (1) |
| GSE86593 |
Transcriptomic assessment of PCB-resistance in Atlantic killifish (Fundulus heteroclitus) embryos from a marine Superfund site |
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| Relations |
| BioSample |
SAMN05752044 |
| SRA |
SRX2148781 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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