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Sample GSM237187 Query DataSets for GSM237187
Status Public on Oct 20, 2007
Title breast tumor part_IDC_rep1_1657
Sample type RNA
 
Channel 1
Source name Infiltrating Ductal Carcinoma (IDC)
Organism Homo sapiens
Characteristics er/pr/her status: ER(-) PR(-)HER(-)
gender: female
tissue: primary tumor
estrogen receptor status: ER(-)
progesterone receptor status: PR(-)
Treatment protocol The surgical removed tumors and non-tumor part of breast specimens were excised, collected and snap-frozen in liquid nitrogen immediately before RNA extraction.
Growth protocol The fresh samples used for this study were immediately frozen by liquid nitrogen without any additional growth procedure applied before RNA extraction.
Extracted molecule total RNA
Extraction protocol Trizol reagent combined with Rneasy mini kit
Label Cy5
Label protocol Agilent Low RNA Input Fluorescent Linear Amplification Kit, protocol version 2.0
 
Channel 2
Source name Stratagene's human common reference RNA
Organism Homo sapiens
Characteristics reference: Stratagene's human common reference RNA
Treatment protocol The surgical removed tumors and non-tumor part of breast specimens were excised, collected and snap-frozen in liquid nitrogen immediately before RNA extraction.
Growth protocol The fresh samples used for this study were immediately frozen by liquid nitrogen without any additional growth procedure applied before RNA extraction.
Extracted molecule total RNA
Extraction protocol Trizol reagent combined with Rneasy mini kit
Label Cy3
Label protocol Agilent Low RNA Input Fluorescent Linear Amplification Kit, protocol version 2.0
 
 
Hybridization protocol Agilent Oligo Microarray Kit, hybridization protocol version 5.0
Scan protocol Agilent Oligo Microarray Kit, hybridization protocol version 5.0 with Agilent scanner and Feature Extraction 6.0.
Description Hybridized with Buffer1
Data processing Agilent Two-Color Microarray-Based Gene Expression Analysis, version 4.0
 
Submission date Oct 12, 2007
Last update date Oct 19, 2011
Contact name Hsin-Chieh Yao
E-mail(s) r95524023@ntu.edu.tw
Organization name National Taiwan University
Department CHE
Lab PSE
Street address 1, Rd. Roosevelt, Sec. 4
City Taipei
ZIP/Postal code 106
Country Taiwan
 
Platform ID GPL887
Series (4)
GSE9309 Recovery of biological information under heterogeneous experimental conditions using subgroup standardization.
GSE17040 Functional ER alpha transcriptional regulatory network for cell cycle in an ER(+) breast cancer subgroup
GSE17041 Statistical identification of gene association by CID in application of constructing ER regulatory network
Relations
Reanalyzed by GSE24124
Reanalyzed by GSE33095

Data table header descriptions
ID_REF
VALUE rank-invariant linear LOWESS normalized log2 Ratio (test/ref)

Data table
ID_REF VALUE
1 -5.24064
2 NULL
3 0.03004
4 0.26564
5 -0.94465
6 0.65599
7 -5.38408
8 0.07853
9 0.54853
10 -0.03401
11 -1.04070
12 0.68071
13 -0.52059
14 -5.42584
15 -0.54277
16 0.05937
17 -0.17548
18 0.06642
20 0.94967
21 -5.45584

Total number of rows: 22153

Table truncated, full table size 302 Kbytes.




Supplementary file Size Download File type/resource
GSM237187.txt.gz 4.5 Mb (ftp)(http) TXT
Processed data included within Sample table

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