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GEO accession:
Sample GSM238793
Query DataSets for GSM238793
Status
Public on Oct 23, 2007
Title
EC_affected_5
Sample type
RNA
Source name
brain, Entorhinal Cortex
Organism
Homo sapiens
Characteristics
Sample Amount: 10 ng
Bio-Source Name: EC_affected_5
Organism: Human
Organ/Tissue Type: brain
Organ Region: Entorhinal Cortex
Cell Type: pyramidal neuron
Ethnicity: unknown
Developmental Stage: Adult
Disease State: Alzheimer's Disease
Sex: female
Genetic Variation: None
Age: 79 years
Extracted molecule
total RNA
Extraction protocol
Arcturus PicoPurebo
Label
biotin
Label protocol
Affymetrix double-round expression profiling
Hybridization protocol
Affymetrix's manufacturer's protocol: hybridization onto Affymetrix Human Genome U133 Plus 2.0 array
Scan protocol
Affymetrix GCOS
Description
arrayconsortium.tgen.org::biosample.456769
cortical layer III neurons
Data processing
MAS5.0; target scaling to 150
Submission date
Oct 19, 2007
Last update date
Jun 26, 2019
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org
Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL570
Series (1)
GSE5281
Alzheimer's disease and the normal aged brain (steph-affy-human-433773)
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Reanalyzed by
GSE133349
Data table header descriptions
ID_REF
VALUE
expression signal
ABS_CALL
absent/marginal/present
DETECTION P-VALUE
significance of absent/marginal/absent call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
1536.55
P
0.000195116
AFFX-BioB-M_at
2301.23
P
4.42873e-05
AFFX-BioB-3_at
1501.91
P
5.16732e-05
AFFX-BioC-5_at
3487.75
P
7.00668e-05
AFFX-BioC-3_at
2962.52
P
4.42873e-05
AFFX-BioDn-5_at
4881.21
P
4.42873e-05
AFFX-BioDn-3_at
15894.3
P
4.42873e-05
AFFX-CreX-5_at
39541.2
P
4.42873e-05
AFFX-CreX-3_at
39021.6
P
4.42873e-05
AFFX-DapX-5_at
9.55181
A
0.382599
AFFX-DapX-M_at
49.1378
A
0.39692
AFFX-DapX-3_at
39.0409
A
0.617401
AFFX-LysX-5_at
29.8671
A
0.455413
AFFX-LysX-M_at
8.50457
A
0.672921
AFFX-LysX-3_at
28.9159
A
0.165861
AFFX-PheX-5_at
6.87751
A
0.81489
AFFX-PheX-M_at
3.74943
A
0.9273
AFFX-PheX-3_at
57.7267
A
0.354453
AFFX-ThrX-5_at
9.31949
A
0.749204
AFFX-ThrX-M_at
20.3393
A
0.603089
Total number of rows:
54675
Table truncated, full table size
1612 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM238793.CEL.gz
4.3 Mb
(ftp)
(http)
CEL
GSM238793.CHP.gz
299.6 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
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