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Sample GSM2388511 Query DataSets for GSM2388511
Status Public on Nov 14, 2016
Title #1-SU042 AML
Sample type genomic
 
Source name Primary AML_SU042
Organism Homo sapiens
Characteristics sample group: Primary AML
subject: SU042
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from the indicated populations using standard protocols (Qiagen Inc)
Label Cy3 and Cy5
Label protocol Standard Ilumina protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Infinium Methylation 450 arrays using standard Illumina protocol
Scan protocol Arrays were scanned using recommened Illumina settings
Data processing Beta values were calculated with Minfi v 1.12.0 (Aryee et al 2014)
 
Submission date Nov 10, 2016
Last update date Nov 16, 2016
Contact name Andrew Gentles
Organization name Stanford University
Street address 1201 Welch Road
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL13534
Series (2)
GSE89776 Pluripotent Reprogramming of Human AML Resets Leukemic Behavior and Models Therapeutic Targeting of Subclones [methylation]
GSE89778 Pluripotent Reprogramming of Human AML Resets Leukemic Behavior and Models Therapeutic Targeting of Subclones

Data table header descriptions
ID_REF
VALUE Unnormalized beta values

Data table
ID_REF VALUE
cg00050873 0
cg00212031 0
cg00213748 0.11033499
cg00214611 0
cg03248158 0.006147768
cg03251918 0.836884777
cg03252709 0.63618933
cg03253629 0.06449254
cg03253831 0.07118572
cg03257255 0.820304763
cg03260566 0.036533072
cg03266576 0.013190965
cg03271827 0.385201635
cg03274876 0.010601304
cg03281983 0.039572832
cg03282686 0.013223971
cg03291607 0.93722336
cg03292388 0.033137262
cg03304610 0.023064776
cg03307425 0.982993255

Total number of rows: 453517

Table truncated, full table size 10103 Kbytes.




Supplementary file Size Download File type/resource
GSM2388511_200109350023_R01C01_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM2388511_200109350023_R01C01_Red.idat.gz 4.0 Mb (ftp)(http) IDAT
Processed data included within Sample table

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