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Sample GSM2389529 Query DataSets for GSM2389529
Status Public on Oct 03, 2017
Title CS6693 Replicate 1
Sample type RNA
Source name Aerial parts of seedling
Organism Arabidopsis thaliana
Characteristics accession: CS6693
age: 18-days-old
tissue: Aerial parts of seedling
Growth protocol 18-days-old seedlings were growing on 1% agar plates containing Murashige and Skoog (MS)
Extracted molecule total RNA
Extraction protocol Approximately 500 μg total RNA was extracted from each sample using TRIzol (Invitrogen)
Label Cy3
Label protocol labeling were performed using the Agilent Low RNA Input Linear Amplification Kit (Agilent Technology), according to the manufacturer’s protocol.
Hybridization protocol Hybridization was performed using the in situ Hybridization Kit Plus (Agilent Technologies).
Scan protocol Scanned on an Agilent G2505 BDNA microarray scanner (Agilent Technologies)
Description Gene expression of CS6693
Data processing Data analysis was performed by Feature Extraction and Image Analysis software (Agilent Technologies)
Submission date Nov 14, 2016
Last update date Oct 03, 2017
Contact name Kazumasa Shirai
Phone 0948-29-7842
Organization name Kyushu Institute of Technology
Department Frontier Research Academy for Young Researchers
Lab Hanada lab
Street address 680-4 Kawazu
City Iizuka
State/province Fukuoka
ZIP/Postal code 820-8502
Country Japan
Platform ID GPL14937
Series (1)
GSE89805 Transcriptome analysis of annotated coding genes and sORF at 74 accessions of A. thaliana

Data table header descriptions
VALUE gProcessedSignal

Data table
ATRIKEN31987 3.235881
ATRIKEN13566 1945.572
ATRIKEN08029 11.32817
ATRIKEN27822 3.259742
ATRIKEN27713 3.264379
ATRIKEN10969 3.267637
ATRIKEN20199 4402.058
ATRIKEN30075 3.268836
ATRIKEN30830 3.266851
ATRIKEN07335 68.53383
ATRIKEN13579 307.3642
ATRIKEN14133 897.3541
ATRIKEN11487 3.247412
ATRIKEN20010 1783.818
ATRIKEN12111 5453.219
ATRIKEN17481 3.427937
ATRIKEN03251 10.64233
ATRIKEN01799 4782.051
ATRIKEN23687 3840.183
ATRIKEN21530 4.679337

Total number of rows: 34262

Table truncated, full table size 732 Kbytes.

Supplementary file Size Download File type/resource
GSM2389529_CS6693_rep1.txt.gz 6.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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