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Sample GSM2389530 Query DataSets for GSM2389530
Status Public on Oct 03, 2017
Title CS6693 Replicate 2
Sample type RNA
Source name Aerial parts of seedling
Organism Arabidopsis thaliana
Characteristics accession: CS6693
age: 18-days-old
tissue: Aerial parts of seedling
Growth protocol 18-days-old seedlings were growing on 1% agar plates containing Murashige and Skoog (MS)
Extracted molecule total RNA
Extraction protocol Approximately 500 μg total RNA was extracted from each sample using TRIzol (Invitrogen)
Label Cy3
Label protocol labeling were performed using the Agilent Low RNA Input Linear Amplification Kit (Agilent Technology), according to the manufacturer’s protocol.
Hybridization protocol Hybridization was performed using the in situ Hybridization Kit Plus (Agilent Technologies).
Scan protocol Scanned on an Agilent G2505 BDNA microarray scanner (Agilent Technologies)
Description Gene expression of CS6693
Data processing Data analysis was performed by Feature Extraction and Image Analysis software (Agilent Technologies)
Submission date Nov 14, 2016
Last update date Oct 03, 2017
Contact name Kazumasa Shirai
Phone 0948-29-7842
Organization name Kyushu Institute of Technology
Department Frontier Research Academy for Young Researchers
Lab Hanada lab
Street address 680-4 Kawazu
City Iizuka
State/province Fukuoka
ZIP/Postal code 820-8502
Country Japan
Platform ID GPL14937
Series (1)
GSE89805 Transcriptome analysis of annotated coding genes and sORF at 74 accessions of A. thaliana

Data table header descriptions
VALUE gProcessedSignal

Data table
ATRIKEN31987 3.004166
ATRIKEN13566 2220.475
ATRIKEN08029 7.012973
ATRIKEN27822 3.013503
ATRIKEN27713 3.01545
ATRIKEN10969 4.030077
ATRIKEN20199 4764.315
ATRIKEN30075 3.017552
ATRIKEN30830 5.417629
ATRIKEN07335 102.7868
ATRIKEN13579 318.8584
ATRIKEN14133 941.8943
ATRIKEN11487 3.008799
ATRIKEN20010 1835.082
ATRIKEN12111 5434.114
ATRIKEN17481 2.995194
ATRIKEN03251 14.37001
ATRIKEN01799 5602.195
ATRIKEN23687 3443.203
ATRIKEN21530 5.405651

Total number of rows: 34262

Table truncated, full table size 732 Kbytes.

Supplementary file Size Download File type/resource
GSM2389530_CS6693_rep2.txt.gz 6.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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