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Sample GSM2389531 Query DataSets for GSM2389531
Status Public on Oct 03, 2017
Title CS6706 Replicate 1
Sample type RNA
Source name Aerial parts of seedling
Organism Arabidopsis thaliana
Characteristics accession: CS6706
age: 18-days-old
tissue: Aerial parts of seedling
Growth protocol 18-days-old seedlings were growing on 1% agar plates containing Murashige and Skoog (MS)
Extracted molecule total RNA
Extraction protocol Approximately 500 μg total RNA was extracted from each sample using TRIzol (Invitrogen)
Label Cy3
Label protocol labeling were performed using the Agilent Low RNA Input Linear Amplification Kit (Agilent Technology), according to the manufacturer’s protocol.
Hybridization protocol Hybridization was performed using the in situ Hybridization Kit Plus (Agilent Technologies).
Scan protocol Scanned on an Agilent G2505 BDNA microarray scanner (Agilent Technologies)
Description Gene expression of CS6706
Data processing Data analysis was performed by Feature Extraction and Image Analysis software (Agilent Technologies)
Submission date Nov 14, 2016
Last update date Oct 03, 2017
Contact name Kazumasa Shirai
Phone 0948-29-7842
Organization name Kyushu Institute of Technology
Department Frontier Research Academy for Young Researchers
Lab Hanada lab
Street address 680-4 Kawazu
City Iizuka
State/province Fukuoka
ZIP/Postal code 820-8502
Country Japan
Platform ID GPL14937
Series (1)
GSE89805 Transcriptome analysis of annotated coding genes and sORF at 74 accessions of A. thaliana

Data table header descriptions
VALUE gProcessedSignal

Data table
ATRIKEN31987 5.038935
ATRIKEN13566 1291.392
ATRIKEN08029 12.39472
ATRIKEN27822 3.019488
ATRIKEN27713 5.075523
ATRIKEN10969 7.069926
ATRIKEN20199 2836.642
ATRIKEN30075 3.021395
ATRIKEN30830 3.018951
ATRIKEN07335 78.6782
ATRIKEN13579 159.9191
ATRIKEN14133 532.688
ATRIKEN11487 3.452478
ATRIKEN20010 780.121
ATRIKEN12111 4049.555
ATRIKEN17481 3.65511
ATRIKEN03251 26.94185
ATRIKEN01799 5739.418
ATRIKEN23687 2970.584
ATRIKEN21530 2.93185

Total number of rows: 34262

Table truncated, full table size 732 Kbytes.

Supplementary file Size Download File type/resource
GSM2389531_CS6706_rep1.txt.gz 6.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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