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Sample GSM2389532 Query DataSets for GSM2389532
Status Public on Oct 03, 2017
Title CS6706 Replicate 2
Sample type RNA
Source name Aerial parts of seedling
Organism Arabidopsis thaliana
Characteristics accession: CS6706
age: 18-days-old
tissue: Aerial parts of seedling
Growth protocol 18-days-old seedlings were growing on 1% agar plates containing Murashige and Skoog (MS)
Extracted molecule total RNA
Extraction protocol Approximately 500 μg total RNA was extracted from each sample using TRIzol (Invitrogen)
Label Cy3
Label protocol labeling were performed using the Agilent Low RNA Input Linear Amplification Kit (Agilent Technology), according to the manufacturer’s protocol.
Hybridization protocol Hybridization was performed using the in situ Hybridization Kit Plus (Agilent Technologies).
Scan protocol Scanned on an Agilent G2505 BDNA microarray scanner (Agilent Technologies)
Description Gene expression of CS6706
Data processing Data analysis was performed by Feature Extraction and Image Analysis software (Agilent Technologies)
Submission date Nov 14, 2016
Last update date Oct 03, 2017
Contact name Kazumasa Shirai
Phone 0948-29-7842
Organization name Kyushu Institute of Technology
Department Frontier Research Academy for Young Researchers
Lab Hanada lab
Street address 680-4 Kawazu
City Iizuka
State/province Fukuoka
ZIP/Postal code 820-8502
Country Japan
Platform ID GPL14937
Series (1)
GSE89805 Transcriptome analysis of annotated coding genes and sORF at 74 accessions of A. thaliana

Data table header descriptions
VALUE gProcessedSignal

Data table
ATRIKEN31987 2.866713
ATRIKEN13566 1190.141
ATRIKEN08029 4.119817
ATRIKEN27822 2.890203
ATRIKEN27713 4.631673
ATRIKEN10969 3.016019
ATRIKEN20199 2651.148
ATRIKEN30075 2.901172
ATRIKEN30830 2.900432
ATRIKEN07335 97.96204
ATRIKEN13579 212.0706
ATRIKEN14133 491.6743
ATRIKEN11487 4.757141
ATRIKEN20010 782.2004
ATRIKEN12111 3523.059
ATRIKEN17481 24.96452
ATRIKEN03251 23.52533
ATRIKEN01799 5414.084
ATRIKEN23687 3460.787
ATRIKEN21530 7.360389

Total number of rows: 34262

Table truncated, full table size 732 Kbytes.

Supplementary file Size Download File type/resource
GSM2389532_CS6706_rep2.txt.gz 6.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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