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Sample GSM2389533 Query DataSets for GSM2389533
Status Public on Oct 03, 2017
Title CS6736 Replicate 1
Sample type RNA
Source name Aerial parts of seedling
Organism Arabidopsis thaliana
Characteristics accession: CS6736
age: 18-days-old
tissue: Aerial parts of seedling
Growth protocol 18-days-old seedlings were growing on 1% agar plates containing Murashige and Skoog (MS)
Extracted molecule total RNA
Extraction protocol Approximately 500 μg total RNA was extracted from each sample using TRIzol (Invitrogen)
Label Cy3
Label protocol labeling were performed using the Agilent Low RNA Input Linear Amplification Kit (Agilent Technology), according to the manufacturer’s protocol.
Hybridization protocol Hybridization was performed using the in situ Hybridization Kit Plus (Agilent Technologies).
Scan protocol Scanned on an Agilent G2505 BDNA microarray scanner (Agilent Technologies)
Description Gene expression of CS6736
Data processing Data analysis was performed by Feature Extraction and Image Analysis software (Agilent Technologies)
Submission date Nov 14, 2016
Last update date Oct 03, 2017
Contact name Kazumasa Shirai
Phone 0948-29-7842
Organization name Kyushu Institute of Technology
Department Frontier Research Academy for Young Researchers
Lab Hanada lab
Street address 680-4 Kawazu
City Iizuka
State/province Fukuoka
ZIP/Postal code 820-8502
Country Japan
Platform ID GPL14937
Series (1)
GSE89805 Transcriptome analysis of annotated coding genes and sORF at 74 accessions of A. thaliana

Data table header descriptions
VALUE gProcessedSignal

Data table
ATRIKEN31987 2.695709
ATRIKEN13566 1635.082
ATRIKEN08029 9.081797
ATRIKEN27822 2.714358
ATRIKEN27713 2.718327
ATRIKEN10969 2.721356
ATRIKEN20199 2787.038
ATRIKEN30075 2.724444
ATRIKEN30830 2.723471
ATRIKEN07335 98.93946
ATRIKEN13579 817.7348
ATRIKEN14133 909.6055
ATRIKEN11487 7.012302
ATRIKEN20010 782.7212
ATRIKEN12111 3232.287
ATRIKEN17481 4.987955
ATRIKEN03251 17.45175
ATRIKEN01799 6689.055
ATRIKEN23687 3630.326
ATRIKEN21530 56.53966

Total number of rows: 34262

Table truncated, full table size 732 Kbytes.

Supplementary file Size Download File type/resource
GSM2389533_CS6736_rep1.txt.gz 6.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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