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Sample GSM2389534 Query DataSets for GSM2389534
Status Public on Oct 03, 2017
Title CS6736 Replicate 2
Sample type RNA
Source name Aerial parts of seedling
Organism Arabidopsis thaliana
Characteristics accession: CS6736
age: 18-days-old
tissue: Aerial parts of seedling
Growth protocol 18-days-old seedlings were growing on 1% agar plates containing Murashige and Skoog (MS)
Extracted molecule total RNA
Extraction protocol Approximately 500 μg total RNA was extracted from each sample using TRIzol (Invitrogen)
Label Cy3
Label protocol labeling were performed using the Agilent Low RNA Input Linear Amplification Kit (Agilent Technology), according to the manufacturer’s protocol.
Hybridization protocol Hybridization was performed using the in situ Hybridization Kit Plus (Agilent Technologies).
Scan protocol Scanned on an Agilent G2505 BDNA microarray scanner (Agilent Technologies)
Description Gene expression of CS6736
Data processing Data analysis was performed by Feature Extraction and Image Analysis software (Agilent Technologies)
Submission date Nov 14, 2016
Last update date Oct 03, 2017
Contact name Kazumasa Shirai
Phone 0948-29-7842
Organization name Kyushu Institute of Technology
Department Frontier Research Academy for Young Researchers
Lab Hanada lab
Street address 680-4 Kawazu
City Iizuka
State/province Fukuoka
ZIP/Postal code 820-8502
Country Japan
Platform ID GPL14937
Series (1)
GSE89805 Transcriptome analysis of annotated coding genes and sORF at 74 accessions of A. thaliana

Data table header descriptions
VALUE gProcessedSignal

Data table
ATRIKEN31987 2.792276
ATRIKEN13566 1334.532
ATRIKEN08029 13.3914
ATRIKEN27822 2.820677
ATRIKEN27713 2.82851
ATRIKEN10969 7.304591
ATRIKEN20199 2608.504
ATRIKEN30075 2.850573
ATRIKEN30830 2.853946
ATRIKEN07335 54.28415
ATRIKEN13579 480.5916
ATRIKEN14133 937.2641
ATRIKEN11487 2.857885
ATRIKEN20010 639.5013
ATRIKEN12111 2666.216
ATRIKEN17481 2.848343
ATRIKEN03251 29.99769
ATRIKEN01799 5756.959
ATRIKEN23687 3179.706
ATRIKEN21530 52.13191

Total number of rows: 34262

Table truncated, full table size 732 Kbytes.

Supplementary file Size Download File type/resource
GSM2389534_CS6736_rep2.txt.gz 6.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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