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Sample GSM2389535 Query DataSets for GSM2389535
Status Public on Oct 03, 2017
Title CS6762 Replicate 1
Sample type RNA
Source name Aerial parts of seedling
Organism Arabidopsis thaliana
Characteristics accession: CS6762
age: 18-days-old
tissue: Aerial parts of seedling
Growth protocol 18-days-old seedlings were growing on 1% agar plates containing Murashige and Skoog (MS)
Extracted molecule total RNA
Extraction protocol Approximately 500 μg total RNA was extracted from each sample using TRIzol (Invitrogen)
Label Cy3
Label protocol labeling were performed using the Agilent Low RNA Input Linear Amplification Kit (Agilent Technology), according to the manufacturer’s protocol.
Hybridization protocol Hybridization was performed using the in situ Hybridization Kit Plus (Agilent Technologies).
Scan protocol Scanned on an Agilent G2505 BDNA microarray scanner (Agilent Technologies)
Description Gene expression of CS6762
Data processing Data analysis was performed by Feature Extraction and Image Analysis software (Agilent Technologies)
Submission date Nov 14, 2016
Last update date Oct 03, 2017
Contact name Kazumasa Shirai
Phone 0948-29-7842
Organization name Kyushu Institute of Technology
Department Frontier Research Academy for Young Researchers
Lab Hanada lab
Street address 680-4 Kawazu
City Iizuka
State/province Fukuoka
ZIP/Postal code 820-8502
Country Japan
Platform ID GPL14937
Series (1)
GSE89805 Transcriptome analysis of annotated coding genes and sORF at 74 accessions of A. thaliana

Data table header descriptions
VALUE gProcessedSignal

Data table
ATRIKEN31987 7.9996
ATRIKEN13566 2631.582
ATRIKEN08029 5.846239
ATRIKEN27822 3.161463
ATRIKEN27713 9.07162
ATRIKEN10969 3.16554
ATRIKEN20199 5476.111
ATRIKEN30075 7.462993
ATRIKEN30830 3.152867
ATRIKEN07335 80.68136
ATRIKEN13579 519.3248
ATRIKEN14133 1223.126
ATRIKEN11487 17.65831
ATRIKEN20010 1000.86
ATRIKEN12111 5139.587
ATRIKEN17481 3.071837
ATRIKEN03251 19.03346
ATRIKEN01799 8576.861
ATRIKEN23687 4845.74
ATRIKEN21530 20.29461

Total number of rows: 34262

Table truncated, full table size 732 Kbytes.

Supplementary file Size Download File type/resource
GSM2389535_CS6762_rep1.txt.gz 6.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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