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Sample GSM2389536 Query DataSets for GSM2389536
Status Public on Oct 03, 2017
Title CS6762 Replicate 2
Sample type RNA
Source name Aerial parts of seedling
Organism Arabidopsis thaliana
Characteristics accession: CS6762
age: 18-days-old
tissue: Aerial parts of seedling
Growth protocol 18-days-old seedlings were growing on 1% agar plates containing Murashige and Skoog (MS)
Extracted molecule total RNA
Extraction protocol Approximately 500 μg total RNA was extracted from each sample using TRIzol (Invitrogen)
Label Cy3
Label protocol labeling were performed using the Agilent Low RNA Input Linear Amplification Kit (Agilent Technology), according to the manufacturer’s protocol.
Hybridization protocol Hybridization was performed using the in situ Hybridization Kit Plus (Agilent Technologies).
Scan protocol Scanned on an Agilent G2505 BDNA microarray scanner (Agilent Technologies)
Description Gene expression of CS6762
Data processing Data analysis was performed by Feature Extraction and Image Analysis software (Agilent Technologies)
Submission date Nov 14, 2016
Last update date Oct 03, 2017
Contact name Kazumasa Shirai
Phone 0948-29-7842
Organization name Kyushu Institute of Technology
Department Frontier Research Academy for Young Researchers
Lab Hanada lab
Street address 680-4 Kawazu
City Iizuka
State/province Fukuoka
ZIP/Postal code 820-8502
Country Japan
Platform ID GPL14937
Series (1)
GSE89805 Transcriptome analysis of annotated coding genes and sORF at 74 accessions of A. thaliana

Data table header descriptions
VALUE gProcessedSignal

Data table
ATRIKEN31987 3.127136
ATRIKEN13566 1966.278
ATRIKEN08029 10.0557
ATRIKEN27822 3.127168
ATRIKEN27713 3.124052
ATRIKEN10969 6.68513
ATRIKEN20199 4285.631
ATRIKEN30075 3.100659
ATRIKEN30830 3.092444
ATRIKEN07335 66.29212
ATRIKEN13579 407.9278
ATRIKEN14133 1032.39
ATRIKEN11487 3.656302
ATRIKEN20010 793.197
ATRIKEN12111 4605.122
ATRIKEN17481 3.663138
ATRIKEN03251 20.76937
ATRIKEN01799 6370.825
ATRIKEN23687 3720.981
ATRIKEN21530 19.48764

Total number of rows: 34262

Table truncated, full table size 732 Kbytes.

Supplementary file Size Download File type/resource
GSM2389536_CS6762_rep2.txt.gz 6.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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