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Sample GSM2389537 Query DataSets for GSM2389537
Status Public on Oct 03, 2017
Title CS6769 Replicate 1
Sample type RNA
Source name Aerial parts of seedling
Organism Arabidopsis thaliana
Characteristics accession: CS6769
age: 18-days-old
tissue: Aerial parts of seedling
Growth protocol 18-days-old seedlings were growing on 1% agar plates containing Murashige and Skoog (MS)
Extracted molecule total RNA
Extraction protocol Approximately 500 μg total RNA was extracted from each sample using TRIzol (Invitrogen)
Label Cy3
Label protocol labeling were performed using the Agilent Low RNA Input Linear Amplification Kit (Agilent Technology), according to the manufacturer’s protocol.
Hybridization protocol Hybridization was performed using the in situ Hybridization Kit Plus (Agilent Technologies).
Scan protocol Scanned on an Agilent G2505 BDNA microarray scanner (Agilent Technologies)
Description Gene expression of CS6769
Data processing Data analysis was performed by Feature Extraction and Image Analysis software (Agilent Technologies)
Submission date Nov 14, 2016
Last update date Oct 03, 2017
Contact name Kazumasa Shirai
Phone 0948-29-7842
Organization name Kyushu Institute of Technology
Department Frontier Research Academy for Young Researchers
Lab Hanada lab
Street address 680-4 Kawazu
City Iizuka
State/province Fukuoka
ZIP/Postal code 820-8502
Country Japan
Platform ID GPL14937
Series (1)
GSE89805 Transcriptome analysis of annotated coding genes and sORF at 74 accessions of A. thaliana

Data table header descriptions
VALUE gProcessedSignal

Data table
ATRIKEN31987 2.819925
ATRIKEN13566 1700.225
ATRIKEN08029 10.90747
ATRIKEN27822 2.809418
ATRIKEN27713 2.805138
ATRIKEN10969 4.930635
ATRIKEN20199 3868.505
ATRIKEN30075 2.78366
ATRIKEN30830 2.777295
ATRIKEN07335 200.5733
ATRIKEN13579 362.5838
ATRIKEN14133 589.8145
ATRIKEN11487 2.748146
ATRIKEN20010 797.4813
ATRIKEN12111 3281.256
ATRIKEN17481 2.71451
ATRIKEN03251 30.59847
ATRIKEN01799 11799.63
ATRIKEN23687 3332.874
ATRIKEN21530 9.890347

Total number of rows: 34262

Table truncated, full table size 732 Kbytes.

Supplementary file Size Download File type/resource
GSM2389537_CS6769_rep1.txt.gz 6.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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