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Sample GSM2389666 Query DataSets for GSM2389666
Status Public on Oct 03, 2017
Title CS22695 Replicate 2
Sample type RNA
 
Source name Aerial parts of seedling
Organism Arabidopsis thaliana
Characteristics accession: CS22695
age: 18-days-old
tissue: Aerial parts of seedling
Growth protocol 18-days-old seedlings were growing on 1% agar plates containing Murashige and Skoog (MS)
Extracted molecule total RNA
Extraction protocol Approximately 500 μg total RNA was extracted from each sample using TRIzol (Invitrogen)
Label Cy3
Label protocol labeling were performed using the Agilent Low RNA Input Linear Amplification Kit (Agilent Technology), according to the manufacturer’s protocol.
 
Hybridization protocol Hybridization was performed using the in situ Hybridization Kit Plus (Agilent Technologies).
Scan protocol Scanned on an Agilent G2505 BDNA microarray scanner (Agilent Technologies)
Description Gene expression of CS22695
Data processing Data analysis was performed by Feature Extraction and Image Analysis software (Agilent Technologies)
 
Submission date Nov 14, 2016
Last update date Oct 03, 2017
Contact name Kazumasa Shirai
E-mail(s) shirai.kazumasa348@mail.kyutech.jp
Phone 0948-29-7842
Organization name Kyushu Institute of Technology
Department Frontier Research Academy for Young Researchers
Lab Hanada lab
Street address 680-4 Kawazu
City Iizuka
State/province Fukuoka
ZIP/Postal code 820-8502
Country Japan
 
Platform ID GPL14937
Series (1)
GSE89805 Transcriptome analysis of annotated coding genes and sORF at 74 accessions of A. thaliana

Data table header descriptions
ID_REF
VALUE gProcessedSignal

Data table
ID_REF VALUE
ATRIKEN31987 6.406826
ATRIKEN13566 2648.632
ATRIKEN08029 6.393308
ATRIKEN27822 6.38429
ATRIKEN27713 6.372282
ATRIKEN10969 14.20833
ATRIKEN20199 2716.961
ATRIKEN30075 6.315389
ATRIKEN30830 6.296796
ATRIKEN07335 172.5261
ATRIKEN13579 646.9018
ATRIKEN14133 435.6665
ATRIKEN11487 6.99177
ATRIKEN20010 1206.63
ATRIKEN12111 1946.23
ATRIKEN17481 6.116784
ATRIKEN03251 37.30206
ATRIKEN01799 6979.707
ATRIKEN23687 3101.621
ATRIKEN21530 10.13674

Total number of rows: 34262

Table truncated, full table size 732 Kbytes.




Supplementary file Size Download File type/resource
GSM2389666_CS22695_rep2.txt.gz 6.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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