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Sample GSM243025 Query DataSets for GSM243025
Status Public on Apr 10, 2008
Title ALL_10kXba_#9
Sample type genomic
 
Source name ALL blood/bone marrow
Organism Homo sapiens
Characteristics ALL patient
Treatment protocol Mononuclear cells were harvested from peripheral blood or bone marrow of patients with ALL at presentation and cryopreserved in liquid nitrogen.
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol DNA was prepared using standard proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Affymetrix 10K 2.0 mapping assay protocol and Affymetrix 500K mapping assay protocol
 
Hybridization protocol Affymetrix 10K 2.0 mapping assay protocol and Affymetrix 500K mapping assay protocol
Scan protocol Affymetrix GeneChip scanner 3000-7G
Description SNP genotype data from ALL patient at diagnosis
Data processing GCOS, GTYPE. Gene calling algorithms MPALM and BRLLM, respectively.
 
Submission date Nov 14, 2007
Last update date Aug 14, 2011
Contact name Kajsa Paulsson
E-mail(s) kajsa.paulsson@cancer.org.uk
Organization name Cancer Research UK
Department Medical Oncology Centre
Street address John Vane Science Centre, Charterhouse Square
City London
ZIP/Postal code EC1M 6BQ
Country United Kingdom
 
Platform ID GPL2641
Series (1)
GSE9611 Adult and adolescent acute lymphoblastic leukemia

Data table header descriptions
ID_REF
VALUE Genotypes: AA, AB, BB, No Call
CALL ZONE

Data table
ID_REF VALUE CALL ZONE
SNP_A-1513509 BB 0.095922
SNP_A-1518411 AB 0.146377
SNP_A-1511066 AA 0.070004
SNP_A-1517367 AA 0.025905
SNP_A-1512567 BB 0.075177
SNP_A-1519604 AA 0.312943
SNP_A-1507932 AB 0.143837
SNP_A-1519685 BB 0.146681
SNP_A-1516165 AB 0.307176
SNP_A-1514890 AA 0.092282
SNP_A-1507580 BB 0.174030
SNP_A-1510991 AA 0.026213
SNP_A-1516205 BB 0.054365
SNP_A-1512666 AA 0.215786
SNP_A-1512740 BB 0.122952
SNP_A-1512132 AA 0.110392
SNP_A-1516082 AB 0.275716
SNP_A-1511962 BB 0.136866
SNP_A-1515637 BB 0.151242
SNP_A-1518789 AB 0.201554

Total number of rows: 10204

Table truncated, full table size 260 Kbytes.




Supplementary file Size Download File type/resource
GSM243025.CEL.gz 1.6 Mb (ftp)(http) CEL
GSM243025.txt.gz 228.1 Kb (ftp)(http) TXT
Processed data included within Sample table

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