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Sample GSM243030 Query DataSets for GSM243030
Status Public on Apr 10, 2008
Title ALL_10kXba_#14
Sample type genomic
 
Source name ALL blood/bone marrow
Organism Homo sapiens
Characteristics ALL patient
Treatment protocol Mononuclear cells were harvested from peripheral blood or bone marrow of patients with ALL at presentation and cryopreserved in liquid nitrogen.
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol DNA was prepared using standard proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Affymetrix 10K 2.0 mapping assay protocol and Affymetrix 500K mapping assay protocol
 
Hybridization protocol Affymetrix 10K 2.0 mapping assay protocol and Affymetrix 500K mapping assay protocol
Scan protocol Affymetrix GeneChip scanner 3000-7G
Description SNP genotype data from ALL patient at diagnosis
Data processing GCOS, GTYPE. Gene calling algorithms MPALM and BRLLM, respectively.
 
Submission date Nov 14, 2007
Last update date Aug 14, 2011
Contact name Kajsa Paulsson
E-mail(s) kajsa.paulsson@cancer.org.uk
Organization name Cancer Research UK
Department Medical Oncology Centre
Street address John Vane Science Centre, Charterhouse Square
City London
ZIP/Postal code EC1M 6BQ
Country United Kingdom
 
Platform ID GPL2641
Series (1)
GSE9611 Adult and adolescent acute lymphoblastic leukemia

Data table header descriptions
ID_REF
VALUE Genotypes: AA, AB, BB, No Call
CALL ZONE

Data table
ID_REF VALUE CALL ZONE
SNP_A-1513509 AB 0.089019
SNP_A-1518411 BB 0.131382
SNP_A-1511066 BB 0.025147
SNP_A-1517367 BB 0.002541
SNP_A-1512567 AB 0.723665
SNP_A-1519604 AB 0.305206
SNP_A-1507932 AA 0.301452
SNP_A-1519685 AB 0.481358
SNP_A-1516165 AA 0.000000
SNP_A-1514890 AB 0.194077
SNP_A-1507580 BB 0.152802
SNP_A-1510991 AA 0.111413
SNP_A-1516205 AA 0.003018
SNP_A-1512666 BB 0.011471
SNP_A-1512740 BB 0.103292
SNP_A-1512132 AA 0.113186
SNP_A-1516082 AB 0.165141
SNP_A-1511962 AB 0.328767
SNP_A-1515637 AB 0.313303
SNP_A-1518789 AB 0.159332

Total number of rows: 10204

Table truncated, full table size 259 Kbytes.




Supplementary file Size Download File type/resource
GSM243030.CEL.gz 1.6 Mb (ftp)(http) CEL
GSM243030.txt.gz 227.6 Kb (ftp)(http) TXT
Processed data included within Sample table

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