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Sample GSM243179 Query DataSets for GSM243179
Status Public on Apr 10, 2008
Title Control_250kSty_#7
Sample type genomic
 
Source name ALL blood/bone marrow
Organism Homo sapiens
Characteristics non-leukemic control
Treatment protocol Mononuclear cells were harvested from peripheral blood or bone marrow of patients with ALL at presentation and cryopreserved in liquid nitrogen.
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol DNA was prepared using standard proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Affymetrix 10K 2.0 mapping assay protocol and Affymetrix 500K mapping assay protocol
 
Hybridization protocol Affymetrix 10K 2.0 mapping assay protocol and Affymetrix 500K mapping assay protocol
Scan protocol Affymetrix GeneChip scanner 3000-7G
Description SNP genotype data from non-leukemic controls
Data processing GCOS, GTYPE. Gene calling algorithms MPALM and BRLLM, respectively.
 
Submission date Nov 14, 2007
Last update date Aug 14, 2011
Contact name Kajsa Paulsson
E-mail(s) kajsa.paulsson@cancer.org.uk
Organization name Cancer Research UK
Department Medical Oncology Centre
Street address John Vane Science Centre, Charterhouse Square
City London
ZIP/Postal code EC1M 6BQ
Country United Kingdom
 
Platform ID GPL3720
Series (1)
GSE9611 Adult and adolescent acute lymphoblastic leukemia

Data table header descriptions
ID_REF
VALUE Genotypes: AA, AB, BB, No Call
CONFIDENCE

Data table
ID_REF VALUE CONFIDENCE
SNP_A-1855402 AB 0.018150
SNP_A-4249904 AB 0.017603
SNP_A-2174835 AB 0.007227
SNP_A-1880271 AB 0.010538
SNP_A-2313232 AB 0.000534
SNP_A-1790918 AB 0.058345
SNP_A-1812820 AB 0.178513
SNP_A-1825137 AB 0.027583
SNP_A-1855057 AB 0.020270
SNP_A-1855068 AB 0.012301
SNP_A-4249854 AB 0.001017
SNP_A-4249855 AB 0.008637
SNP_A-1855365 AB 0.003271
SNP_A-1856257 AB 0.020674
SNP_A-1862900 AB 0.001493
SNP_A-1894450 AB 0.001904
SNP_A-1900543 AB 0.003342
SNP_A-1905760 AB 0.011024
SNP_A-1907304 AB 0.028874
SNP_A-1941504 AB 0.055335

Total number of rows: 238304

Table truncated, full table size 6081 Kbytes.




Supplementary file Size Download File type/resource
GSM243179.CEL.gz 23.6 Mb (ftp)(http) CEL
GSM243179.TXT.gz 4.8 Mb (ftp)(http) TXT
Processed data included within Sample table

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