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Sample GSM243181 Query DataSets for GSM243181
Status Public on Apr 10, 2008
Title Control_250kSty_#9
Sample type genomic
 
Source name ALL blood/bone marrow
Organism Homo sapiens
Characteristics non-leukemic control
Treatment protocol Mononuclear cells were harvested from peripheral blood or bone marrow of patients with ALL at presentation and cryopreserved in liquid nitrogen.
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol DNA was prepared using standard proteinase K digestion and phenol/chloroform extraction
Label biotin
Label protocol Affymetrix 10K 2.0 mapping assay protocol and Affymetrix 500K mapping assay protocol
 
Hybridization protocol Affymetrix 10K 2.0 mapping assay protocol and Affymetrix 500K mapping assay protocol
Scan protocol Affymetrix GeneChip scanner 3000-7G
Description SNP genotype data from non-leukemic controls
Data processing GCOS, GTYPE. Gene calling algorithms MPALM and BRLLM, respectively.
 
Submission date Nov 14, 2007
Last update date Aug 14, 2011
Contact name Kajsa Paulsson
E-mail(s) kajsa.paulsson@cancer.org.uk
Organization name Cancer Research UK
Department Medical Oncology Centre
Street address John Vane Science Centre, Charterhouse Square
City London
ZIP/Postal code EC1M 6BQ
Country United Kingdom
 
Platform ID GPL3720
Series (1)
GSE9611 Adult and adolescent acute lymphoblastic leukemia

Data table header descriptions
ID_REF
VALUE Genotypes: AA, AB, BB, No Call
CONFIDENCE

Data table
ID_REF VALUE CONFIDENCE
SNP_A-1855402 AB 0.022425
SNP_A-4249904 AB 0.010038
SNP_A-2174835 AB 0.014597
SNP_A-1880271 AB 0.007503
SNP_A-2313232 AB 0.001932
SNP_A-1790918 AB 0.112518
SNP_A-1812820 AB 0.180178
SNP_A-1825137 AB 0.002394
SNP_A-1855057 AB 0.017570
SNP_A-1855068 AB 0.092811
SNP_A-4249854 AB 0.096891
SNP_A-4249855 AB 0.032825
SNP_A-1855365 AB 0.002165
SNP_A-1856257 AB 0.045415
SNP_A-1862900 AB 0.000864
SNP_A-1894450 AB 0.002662
SNP_A-1900543 AB 0.006061
SNP_A-1905760 AB 0.040898
SNP_A-1907304 AB 0.011043
SNP_A-1941504 AB 0.001789

Total number of rows: 238304

Table truncated, full table size 6102 Kbytes.




Supplementary file Size Download File type/resource
GSM243181.CEL.gz 23.4 Mb (ftp)(http) CEL
GSM243181.TXT.gz 4.8 Mb (ftp)(http) TXT
Processed data included within Sample table

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