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Sample GSM24433 Query DataSets for GSM24433
Status Public on Jun 11, 2004
Title C. elegans L2 larvae
Sample type SAGE
Anchor NlaIII
Tag Count 117479
Tag Length 10
 
Source name L2 larvae (strain N2)
Organism Caenorhabditis elegans
Extracted molecule total RNA
 
Description Libraries were constructed from total RNA from whole L2 stage larvae (strain N2); 14 bp tags. Tagging enzyme: BsmF1.
Linker sequences and duplicate ditags are excluded.
Keywords = SAGE
Keywords = L2 larvae
Lot batch =
 
Submission date May 28, 2004
Last update date Nov 19, 2008
Contact name Kim Wong
E-mail(s) kwong@bcgsc.ca
Phone 604-877-6000 ext.3265
Fax 604-876-3561
Organization name British Columbia Cancer Agency
Lab British Columbia Genome Sciences Centre
Street address 600 West 10th Avenue
City Vancouver
State/province BC
ZIP/Postal code V5Z 4E6
Country Canada
 
Platform ID GPL1267
Series (1)
GSE1447 C. elegans SAGE

Data table header descriptions
TAG 10 bp tag sequence;
COUNT Absolute tag count
TPM tags per million

Data table
TAG COUNT TPM
GAAACTCTTG 4 34.05
TTCTTCCTTT 1 8.51
TATTCCTTAA 1 8.51
TGCTCTCTCA 1 8.51
CAGAAGCTCT 1 8.51
CACTCCGCGT 1 8.51
TTGTGAGAAC 1 8.51
TTGTCCTGGA 2 17.02
ATTTTCGATA 4 34.05
GGCATCAATA 1 8.51
AAGAAAGTCA 1 8.51
AATAAACCAA 2 17.02
CTGATTAATA 1 8.51
CGGTGAGCTA 1 8.51
ATGGACTCCC 6 51.07
GGCAGTGCCC 1 8.51
CAAATCTGTT 1 8.51
TATGGATGTA 13 110.66
CTATTCGGAA 1 8.51
ACCCAAAAAA 1 8.51

Total number of rows: 24656

Table truncated, full table size 445 Kbytes.




Supplementary data files not provided

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