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Sample GSM24436 Query DataSets for GSM24436
Status Public on Jun 11, 2004
Title C. elegans whole embryos
Sample type SAGE
Anchor NlaIII
Tag Count 123045
Tag Length 10
 
Source name whole embryos (strain N2)
Organism Caenorhabditis elegans
Extracted molecule total RNA
 
Description Libraries were constructed from total RNA from whole embryos (strain N2); 14 bp tags. Tagging enzyme: BsmF1.
Linker sequences and duplicate ditags are excluded.
Keywords = SAGE
Keywords = embryo
Lot batch =
 
Submission date May 28, 2004
Last update date Nov 19, 2008
Contact name Kim Wong
E-mail(s) kwong@bcgsc.ca
Phone 604-877-6000 ext.3265
Fax 604-876-3561
Organization name British Columbia Cancer Agency
Lab British Columbia Genome Sciences Centre
Street address 600 West 10th Avenue
City Vancouver
State/province BC
ZIP/Postal code V5Z 4E6
Country Canada
 
Platform ID GPL1267
Series (1)
GSE1447 C. elegans SAGE

Data table header descriptions
TAG 10 bp tag sequence;
COUNT Absolute tag count
TPM tags per million

Data table
TAG COUNT TPM
GAAACTCTTG 8 65.02
GCTTTTGAAA 1 8.13
TATTCCTTAA 2 16.25
AGAGTCATCA 1 8.13
GGAGATTCGA 2 16.25
TGCTCTCTCA 1 8.13
TTGTGAGAAA 1 8.13
TATTCCTTAG 1 8.13
TTATTCTAAG 1 8.13
GGAGATTCGG 1 8.13
AAGATACATT 1 8.13
ATTTTCGATA 8 65.02
AATAAACCAA 1 8.13
TAATGAAAAA 4 32.51
ATGGACTCCC 11 89.40
ATGTACACCT 1 8.13
AGAAAGAGCA 1 8.13
ATTTTCGATG 1 8.13
TATGGATGTA 5 40.64
CTATTCGGAA 9 73.14

Total number of rows: 25883

Table truncated, full table size 468 Kbytes.




Supplementary data files not provided

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