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Sample GSM24439 Query DataSets for GSM24439
Status Public on Jun 11, 2004
Title C. elegans adult gut (glp-4)
Sample type SAGE
Anchor NlaIII
Tag Count 104786
Tag Length 10
 
Source name dissected gut from adult worms (glp-4)
Organism Caenorhabditis elegans
Extracted molecule total RNA
 
Description Libraries were constructed from total RNA from manually dissected gut of adult worms (glp-4); 14 bp tags. Tagging enzyme: BsmF1.
Linker sequences and duplicate ditags are excluded.
Keywords = SAGE
Keywords = gut
Lot batch =
 
Submission date May 28, 2004
Last update date Nov 19, 2008
Contact name Kim Wong
E-mail(s) kwong@bcgsc.ca
Phone 604-877-6000 ext.3265
Fax 604-876-3561
Organization name British Columbia Cancer Agency
Lab British Columbia Genome Sciences Centre
Street address 600 West 10th Avenue
City Vancouver
State/province BC
ZIP/Postal code V5Z 4E6
Country Canada
 
Platform ID GPL1267
Series (1)
GSE1447 C. elegans SAGE

Data table header descriptions
TAG 10 bp tag sequence;
COUNT Absolute tag count
TPM tags per million

Data table
TAG COUNT TPM
AAAAGGCCAG 1 9.54
TTCTTCCTTT 1 9.54
TTTTTCTGTT 1 9.54
GTCCTGCTCC 1 9.54
GTATTTCCCT 1 9.54
ATGTACACCT 1 9.54
AAAAGTTTAA 2 19.09
TATGGATGTA 2 19.09
ATACGATAAC 1 9.54
AGACGGTTAA 1 9.54
GTTCCATATG 21 200.41
GGATTTCTGA 2 19.09
TTCTCTCCAA 1 9.54
TGACATTGCT 1 9.54
CTGATTAATT 1 9.54
TTCTCTCCAG 5 47.72
AGCCACTGTC 5 47.72
GAACTGAATG 3 28.63
CCTTGTCATT 2 19.09
GTGAATAAAT 1 9.54

Total number of rows: 14384

Table truncated, full table size 261 Kbytes.




Supplementary data files not provided

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