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Sample GSM24443 Query DataSets for GSM24443
Status Public on Jun 11, 2004
Title C. elegans dauer larvae
Sample type SAGE
Anchor NlaIII
Tag Count 132582
Tag Length 10
 
Source name dauer larvae
Organism Caenorhabditis elegans
Extracted molecule total RNA
 
Description Libraries were constructed from total RNA from dauer larvae. 14 bp tags. Tagging enzyme: BsmF1.
Linker sequences and duplicate ditags are excluded.
Keywords = SAGE
Keywords = dauer
Lot batch =
 
Submission date May 28, 2004
Last update date Nov 19, 2008
Contact name Kim Wong
E-mail(s) kwong@bcgsc.ca
Phone 604-877-6000 ext.3265
Fax 604-876-3561
Organization name British Columbia Cancer Agency
Lab British Columbia Genome Sciences Centre
Street address 600 West 10th Avenue
City Vancouver
State/province BC
ZIP/Postal code V5Z 4E6
Country Canada
 
Platform ID GPL1267
Series (1)
GSE1447 C. elegans SAGE

Data table header descriptions
TAG 10 bp tag sequence;
COUNT Absolute tag count
TPM tags per million

Data table
TAG COUNT TPM
TGCTCTCTCA 3 22.63
GTCCTGCTCC 4 30.17
GGTTGGATCT 1 7.54
ATTTTCGATA 3 22.63
GCTTTTGAAT 1 7.54
ACTAAGACGT 1 7.54
GTTTTTTCCC 1 7.54
CGTAATATCT 1 7.54
CAGATATGAA 1 7.54
TCCTCTTCAT 1 7.54
ACAGTGAAGC 1 7.54
GATAGGGAGA 1 7.54
CGCAGGAGTG 1 7.54
CCCCCCCGTC 1 7.54
CCTCCCCAGG 1 7.54
TTCTCTCCAG 18 135.77
GTTTTTTCCT 1 7.54
CTCTTCGTAA 1 7.54
CTGGCACCGG 1 7.54
GTGAATAAAT 1 7.54

Total number of rows: 29403

Table truncated, full table size 530 Kbytes.




Supplementary data files not provided

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