|
| Status |
Public on Sep 05, 2018 |
| Title |
sample1, dataset2 |
| Sample type |
RNA |
| |
|
| Source name |
breast tumor tissue
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: breast tumor
er status: negative
her2 status: negative
tissue preservation method: FFPE
|
| Treatment protocol |
NA
|
| Growth protocol |
NA
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA from FFPE sections was extracted using miRNeasy FFPE kit according to Qiagen's recommendation.
|
| Label |
biotin
|
| Label protocol |
Total RNA was amplified and labeled using Affymetrix's GeneChip® 3' IVT Express kit according to Affymetrix's recommendations.
|
| |
|
| Hybridization protocol |
On GeneChip® HG-U133 Plus2.0 array using GeneChip® Hybridization, Wash, and Stain Kit, according to Affymetrix's standard procedure.
|
| Scan protocol |
Using GeneChip® scanner 3000 according to Affymetrix's standard procedure.
|
| Data processing |
Data set was RMA background corrected,quantile normalized and median-polish summarized using 'expresso' function available from bioconductor package affy.
|
| |
|
| Submission date |
Jan 09, 2017 |
| Last update date |
Sep 05, 2018 |
| Contact name |
Vinu Jose |
| E-mail(s) |
vinu.jose@yahoo.co.in
|
| Organization name |
Institut Jules Bordet – Université Libre de Bruxelles (ULB)
|
| Lab |
Breast Cancer Translational Research Laboratory J.C. Heuson (ULB 290)
|
| Street address |
Rue Meylemeersch 90
|
| City |
Brussels |
| ZIP/Postal code |
1070 |
| Country |
Belgium |
| |
|
| Platform ID |
GPL570 |
| Series (2) |
| GSE93334 |
FFPE samples profiled on HG-U133plus2 array with Affymetrix's GeneChip® 3' IVT Express kit |
| GSE93338 |
Feasibility of Developing Reliable Gene Expression Modules from FFPE Derived RNA Profiled on Affymetrix Arrays |
|
