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Sample GSM2451635 Query DataSets for GSM2451635
Status Public on Sep 05, 2018
Title sample7, dataset2
Sample type RNA
 
Source name breast tumor tissue
Organism Homo sapiens
Characteristics tissue: breast tumor
er status: positive
her2 status: positive
tissue preservation method: FFPE
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol Total RNA from FFPE sections was extracted using miRNeasy FFPE kit according to Qiagen's recommendation.
Label biotin
Label protocol Total RNA was amplified and labeled using Affymetrix's GeneChip® 3' IVT Express kit according to Affymetrix's recommendations.
 
Hybridization protocol On GeneChip® HG-U133 Plus2.0 array using GeneChip® Hybridization, Wash, and Stain Kit, according to Affymetrix's standard procedure.
Scan protocol Using GeneChip® scanner 3000 according to Affymetrix's standard procedure.
Data processing Data set was RMA background corrected,quantile normalized and median-polish summarized using 'expresso' function available from bioconductor package affy.
 
Submission date Jan 09, 2017
Last update date Sep 05, 2018
Contact name Vinu Jose
E-mail(s) vinu.jose@yahoo.co.in
Organization name Institut Jules Bordet – Université Libre de Bruxelles (ULB)
Lab Breast Cancer Translational Research Laboratory J.C. Heuson (ULB 290)
Street address Rue Meylemeersch 90
City Brussels
ZIP/Postal code 1070
Country Belgium
 
Platform ID GPL570
Series (2)
GSE93334 FFPE samples profiled on HG-U133plus2 array with Affymetrix's GeneChip® 3' IVT Express kit
GSE93338 Feasibility of Developing Reliable Gene Expression Modules from FFPE Derived RNA Profiled on Affymetrix Arrays

Data table header descriptions
ID_REF
VALUE Normalized expression values in log2 scale

Data table
ID_REF VALUE
1007_s_at 4.53339974656792
1053_at 1.18581345109949
117_at 1.23258447989104
121_at 4.23113338246616
1255_g_at 1.18094480162909
1294_at 2.56817252889789
1316_at 2.80941811313505
1320_at 1.13205445807872
1405_i_at 1.38589427016675
1431_at 1.0823260060882
1438_at 1.4718623677925
1487_at 2.70773206606762
1494_f_at 1.71121350064599
1552256_a_at 2.65189397515399
1552257_a_at 1.3778041504404
1552258_at 1.28701679202432
1552261_at 1.10500225440397
1552263_at 2.79371064150946
1552264_a_at 1.20006990778005
1552266_at 1.1436924911451

Total number of rows: 54675

Table truncated, full table size 1481 Kbytes.




Supplementary file Size Download File type/resource
GSM2451635_set2_s7.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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