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GEO accession:
Sample GSM246084
Query DataSets for GSM246084
Status
Public on Feb 14, 2008
Title
D. melanogaster adult male heads 454
Sample type
other
Source name
Drosophila melanogaster adult male heads
Organism
Drosophila melanogaster
Characteristics
adult male heads
Extracted molecule
other
Extraction protocol
total RNA, ~18-26nt RNAs isolated using PAGE, ligation to adapters requires 5' monophosphate and 3' OH
Label
not applicable
Label protocol
not applicable
Hybridization protocol
not applicable
Scan protocol
not applicable
Description
small RNAs
Data processing
after removing the flank adaptor sequences, the inserted sequences greater than 18nt were extracted
Submission date
Dec 01, 2007
Last update date
Feb 14, 2008
Contact name
Chung-I Wu
E-mail(s)
cw16@uchicago.edu
Organization name
University of Chicago
Department
Ecology and Evoluation
Lab
Chung-I Wu Lab
Street address
1101 57th East
City
Chicago
State/province
IL
ZIP/Postal code
60637
Country
USA
Platform ID
GPL6196
Series (1)
GSE10515
The birth and death of microRNA genes in Drosophila
Data table header descriptions
ID_REF
Sequence of small RNA (in DNA)
VALUE
Number of times small RNA was sequenced
Data table
ID_REF
VALUE
TAATACTGTCAGGTAAAGATGTC
4021
TAGGAACTTCATACCGTGCTCT
3319
TAAATGCACTATCTGGTACGACA
937
TAATACTGTCAGGTAAAGATGT
891
TATACTGTCAGGTAAAGATGTC
784
TGCTTGGACTACATATGGTTGAGGG
636
TAAGGCACGCGGTGAATGCCA
539
TAGGAACTTAATACCGTGCTCT
303
TCGGTGGGACTTTCGTCCGTTT
289
TGTTAACTGTAAGACTGTGTCT
256
AGCGAGGTATAGAGTTCCTACG
240
TTCGTTGTCGACGAAACCTGCA
239
TNGGAACTTCATACCGTGCTCT
236
ATTGTACTTCATCAGGTGCTCT
226
CTAAGTACTAGTGCCGCAGGAG
216
TAAATGCACTATCTGGTACGAC
179
TGNGGTAGTAGGTTGTATAGT
161
TAATGCACTATCTGGTACGACA
159
TAGCACCATTCGAAATCAGTGCT
156
TAAGGCACGCGGTGAATGCCAA
144
Total number of rows:
8527
Table truncated, full table size
216 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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