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GEO accession:
Sample GSM246086
Query DataSets for GSM246086
Status
Public on Feb 14, 2008
Title
D. pseudoobscura adult male heads 454
Sample type
other
Source name
Drosophila pseudoobscura adult male heads
Organism
Drosophila pseudoobscura
Characteristics
adult male heads
Extracted molecule
other
Extraction protocol
total RNA, ~18-26nt RNAs isolated using PAGE, ligation to adapters requires 5' monophosphate and 3' OH
Label
not applicable
Label protocol
not applicable
Hybridization protocol
not applicable
Scan protocol
not applicable
Description
small RNAs
Data processing
after removing the flank adaptor sequences, the inserted sequences greater than 18nt were extracted
Submission date
Dec 01, 2007
Last update date
Feb 14, 2008
Contact name
Chung-I Wu
E-mail(s)
cw16@uchicago.edu
Organization name
University of Chicago
Department
Ecology and Evoluation
Lab
Chung-I Wu Lab
Street address
1101 57th East
City
Chicago
State/province
IL
ZIP/Postal code
60637
Country
USA
Platform ID
GPL6198
Series (1)
GSE10515
The birth and death of microRNA genes in Drosophila
Data table header descriptions
ID_REF
Sequence of small RNA (in DNA)
VALUE
Number of times small RNA was sequenced
Data table
ID_REF
VALUE
TTTTTTTTGATACGCCAA
1
TTTTTTTTAGGNGGCTTGAGT
1
TTTTTTTGATACGCCAAG
1
TTTTTTTGAGGTGGCTTA
1
TTTTTTCTTCGCCCTGCCTC
1
TTTTTTCNCTCTCCTATCCC
1
TTTTTTAACAAGAGGTGTCAGAAAAGT
1
TTTTTTAACAAGAGGTGTCAG
1
TTTTTGNGCAAATCAATATA
1
TTTTTGGNGATTTTTAGCTGTAT
1
TTTTTGCATACAATTTGACGGT
1
TTTTTGATTTGGTTTGCTCAGAA
1
TTTTTGAAGTGTATGATGGCC
4
TTTTTGAAGTGTATGATGG
1
TTTTTGAAGGTGGATTTGGT
1
TTTTTGAAGGGAACGTTGTGT
1
TTTTTCGTAGTGCCCCTGTAG
1
TTTTTACACACCGCCCGTCACACC
1
TTTTTAACAAGAGGTGTCAG
3
TTTTTAACAAGAGGTGTC
10
Total number of rows:
18978
Table truncated, full table size
437 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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