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Sample GSM252783 Query DataSets for GSM252783
Status Public on Dec 21, 2007
Title DNAse treated CD4+ T-cells on Solexa
Sample type genomic
 
Source name CD4+ T-cells, DNAse Treated
Organism Homo sapiens
Characteristics Treatment: DNAse;Tissue: CD4+ T-cells
Extracted molecule genomic DNA
Extraction protocol Intact nuclei from primary human CD4+ T cells were prepared and digested with DNaseI, and prepared for Dnase-seq as previously described (Crawford et al., 2006a; Crawford et al., 2004; Crawford et al., 2006b).
Label not applicable
Label protocol not applicable
 
Hybridization protocol not applicable
Scan protocol not applicable
Description CD4+ T-cells treated with DNAse and then subjected to high-throuput sequencing
Data processing Sequences were read and raw counts reported. Alignments to build 35 are reported for unique matches only.
 
Submission date Dec 21, 2007
Last update date Dec 21, 2007
Contact name Sean Davis
E-mail(s) sdavis2@mail.nih.gov
Phone 301-435-2652
Organization name National Cancer Institute
Lab Genetics Branch
Street address 37 Convent Drive, Room 6138
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL6314
Series (1)
GSE8486 Whole genome DNAse hypersensitivity in human CD4+ T-cells

Data table header descriptions
ID_REF
VALUE number of observations

Data table
ID_REF VALUE
AAAAAAAAAAAAAAAAAAAA 1658
AAAAAAAAAAAAAAAAAAAC 83
AAAAAAAAAAAAAAAAAAAG 69
AAAAAAAAAAAAAAAAAAAT 47
AAAAAAAAAAAAAAAAAACA 59
AAAAAAAAAAAAAAAAAACC 13
AAAAAAAAAAAAAAAAAACT 1
AAAAAAAAAAAAAAAAAAGA 26
AAAAAAAAAAAAAAAAAAGC 8
AAAAAAAAAAAAAAAAAAGG 22
AAAAAAAAAAAAAAAAAAGT 9
AAAAAAAAAAAAAAAAAATA 13
AAAAAAAAAAAAAAAAAATC 17
AAAAAAAAAAAAAAAAAATG 4
AAAAAAAAAAAAAAAAAATT 11
AAAAAAAAAAAAAAAAACAA 50
AAAAAAAAAAAAAAAAACAC 12
AAAAAAAAAAAAAAAAACAG 2
AAAAAAAAAAAAAAAAACAT 5
AAAAAAAAAAAAAAAAACCA 5

Total number of rows: 14814587

Table truncated, full table size 332798 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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