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Sample GSM2536384 Query DataSets for GSM2536384
Status Public on Feb 18, 2019
Title WT-vehicle _2
Sample type SRA
 
Source name Left ventricle
Organism Mus musculus
Characteristics genotype: Wild type
drug treatment status: Vehicle treated
tissue: Left ventricle
Extracted molecule polyA RNA
Extraction protocol RNA was extracted from mice left ventricle with a Qiagen RNEasy kit
RNA libraries were prepared for sequencing using standard Illumina protocols
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 3000
 
Description sample name: 3686-JW-2
Data processing alignment with STAR v 2.5.2b, controlling for unannotated, non-canonical and rare junctions
read count generation during STAR alignment using –quantmode GeneCounts option that works like HTSeq-Count in default mode
Genome_build: GRCm38
Supplementary_files_format_and_content: txt files, raw read counts output from STAR alignment using option -–quantmode GeneCounts
 
Submission date Mar 14, 2017
Last update date May 15, 2019
Contact name James West
E-mail(s) j.west@vanderbilt.edu
Organization name Vanderbilt University
Department Medicine
Lab Allergy, Pulmonary and Critical Care
Street address 4200 E 9TH Ave, Box B133
City Nashville
State/province TN
ZIP/Postal code 37201
Country USA
 
Platform ID GPL21493
Series (1)
GSE96598 Expression pattern in dSG knockout mutant mice and effect of treatment with ifetroban
Relations
BioSample SAMN06600798
SRA SRX2639328

Supplementary file Size Download File type/resource
GSM2536384_3686-JW-2ReadsPerGene.out.tab.gz 274.4 Kb (ftp)(http) TAB
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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