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Sample GSM257444 Query DataSets for GSM257444
Status Public on Dec 22, 2008
Title UC colon repl 6
Sample type RNA
 
Source name human colon
Organism Homo sapiens
Characteristics UC replicate sample
batch 5
Extracted molecule total RNA
Extraction protocol RNeasy Plus Mini kit (QIAGEN, Hilden, Germany)
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA amplified with TargetAmp 1-round Aminoallyl-aRNA Amplication Kit 101 (Epicentre, WI) (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on the human HG-U133 Plus 2.0 GeneChip array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
Description gene expression data from human colon
Data processing The data were analyzed with GeneSpring version 7.3 using RMA normalization with a custom CDF file(Hs133P_Hs_REFSEQ_8) , then normalized to the internal control for each batch and the mean of the healthy control reference samples.
 
Submission date Jan 16, 2008
Last update date Dec 22, 2008
Contact name Lee Denson
E-mail(s) lee.denson@cchmc.org
Organization name CCHMC
Street address 3333 Burnet Avenue
City Cincinnati
State/province OH
ZIP/Postal code 45229
Country USA
 
Platform ID GPL5760
Series (1)
GSE10191 Human colon expression in healthy controls and UC

Data table header descriptions
ID_REF
VALUE data was RMA normalized, then normalized to the internal control sample for each batch and the mean of the healthy control reference samples

Data table
ID_REF VALUE
NM_000014_at 2.3583622
NM_000015_at 0.44827512
NM_000016_at 0.53822297
NM_000017_at 0.15748315
NM_000018_at 0.4187666
NM_000019_at 0.47832105
NM_000020_at 0.6539274
NM_000021_at 0.5680716
NM_000022_at 1.5501145
NM_000023_at 1.2535758
NM_000024_at 2.0046508
NM_000025_at 0.8248
NM_000026_at 1.2583039
NM_000027_at 1.916173
NM_000028_at 0.7075723
NM_000029_at 5.6539025
NM_000030_at 0.8707366
NM_000031_at 0.5434958
NM_000032_at 1.034745
NM_000033_at 0.8828562

Total number of rows: 26121

Table truncated, full table size 598 Kbytes.




Supplementary file Size Download File type/resource
GSM257444.CEL.gz 5.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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