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Sample GSM25926 Query DataSets for GSM25926
Status Public on Jul 24, 2004
Title SAGE_CGAP_GF0 rat articular cartilage
Sample type SAGE
Anchor NlaIII
Tag Count 120220
Tag Length 10
 
Source name mRAN from rat femoral head cartilage
Organism Rattus norvegicus
Extracted molecule total RNA
 
Description This library represents a Cancer Genome Anatomy Project libray, which was either produced through CGAP funding, or donated to CGAP.
The Cancer Genome Anatomy project (CGAP:http://cgap.nci.nih.gov) is an interdisplinary program established and administered by the National Cancer Institute (NCI:http://www.nci.nih.gov) to generate the information and technological tools needed to decipher the molecular anatomy of the cancer cell.
Femoral head cartilage isolated from 38 day old Outbreed Sprague-Dawley male rats. Femoral head cartilage was collected from 29 rats. mRNA was isolated using Trizol, followed by the use of a direct mRNA extraction kit. Vector used pUC-18 and restriction sites are Site1:Sma1 and site2:Sma1
Keywords = rat femoral cartilage
 
Submission date Jun 22, 2004
Last update date Nov 19, 2008
Contact name Thomas L. Casavant
E-mail(s) cbcb_ge@eng.uiowa.edu
Phone 319 335 6432
Fax 319 384 0944
URL http://genome.uiowa.edu
Organization name University of Iowa
Department Electrical & Computer Department
Lab CBCB Lab
Street address
City Iowa City
State/province IA
ZIP/Postal code 52242
Country USA
 
Platform ID GPL23
Series (1)
GSE1517 Rat Chondrosarcoma

Data table header descriptions
TAG
COUNT SAGE count tag
TPM tags per million

Data table
TAG COUNT TPM
GATATTCATA 1 8.32
TATGGCACAA 1 8.32
CAAATCTGTA 2 16.64
CCAACACTCA 2 16.64
TATGGCACAG 1 8.32
GTGAGTTTTT 1 8.32
ACAAATATGG 1 8.32
TCTGTGTTAT 1 8.32
CAGAACAGAA 1 8.32
TTTGTGCTAC 1 8.32
GCCCCGAATG 1 8.32
AAGTAACACC 1 8.32
GCATCATCGG 2 16.64
AGACAACTAA 1 8.32
GTCTGCTCTG 1 8.32
CACATCTTTC 1 8.32
GTTTTTTCCC 1 8.32
AGTCTTGCCA 1 8.32
TTAGATATCA 3 24.95
ACCCAAAAAC 2 16.64

Total number of rows: 38144

Table truncated, full table size 683 Kbytes.




Supplementary data files not provided

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