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Sample GSM25928 Query DataSets for GSM25928
Status Public on Jul 24, 2004
Title SAGE_CGAP_HF0 Swarm rat chondrosarcoma
Sample type SAGE
Anchor NlaIII
Tag Count 106332
Tag Length 10
 
Source name mRNA from subcutaneously grown Swarm rat chondrosarcoma tissue line TGO
Organism Rattus norvegicus
Extracted molecule total RNA
 
Description This library represents a Cancer Genome Anatomy Project libray, which was either produced through CGAP funding, or donated to CGAP.
The Cancer Genome Anatomy project (CGAP:http://cgap.nci.nih.gov) is an interdisplinary program established and administered by the National Cancer Institute (NCI:http://www.nci.nih.gov) to generate the information and technological tools needed to decipher the molecular anatomy of the cancer cell.
Swarm rat chondrosarcoma TGO is a subcutaneously grown rat chondrosarcoma that is derived from a subcutaneous transplantation of the Swarm rat chondrosarcoma tissue line TG0 into Sprague-Dawley male rats. The subcutaneously grown Swarm rat chondrosarcoma tissue was harvested 3 weeks after initial tumor transplantation. mRNA was isolated from the rat chondrosarcoma using Trizol, followed by the use of a direct mRNA extraction kit.
Vector: pUC-18
R. Site1:Sma1
R. Site2:Sma1
Keywords = Subcutaneous Swarm rat chondrosarcoma tibia tumor
 
Submission date Jun 22, 2004
Last update date Nov 19, 2008
Contact name Thomas L. Casavant
E-mail(s) cbcb_ge@eng.uiowa.edu
Phone 319 335 6432
Fax 319 384 0944
URL http://genome.uiowa.edu
Organization name University of Iowa
Department Electrical & Computer Department
Lab CBCB Lab
Street address
City Iowa City
State/province IA
ZIP/Postal code 52242
Country USA
 
Platform ID GPL23
Series (1)
GSE1517 Rat Chondrosarcoma

Data table header descriptions
TAG
COUNT SAGE count tag
TPM tags per million

Data table
TAG COUNT TPM
GGACCGCTTC 4 37.62
GTTCACTTCT 1 9.40
CCTCCTGAAG 1 9.40
GGTCTGCATA 1 9.40
AAAGCTGGTT 1 9.40
AAGGGCCAGA 1 9.40
CCAAATACAT 1 9.40
CCTATACACG 2 18.81
GGAGGCAGAG 10 94.05
TCAAGGCTGC 11 103.45
CCTCCTGAAT 1 9.40
AATGGCTTTG 1 9.40
GAAACTCTTT 4 37.62
GAAAACTGAC 1 9.40
GGCAGTGCCA 1 9.40
CGATTCTCTC 1 9.40
CTTCCTTCCA 9 84.64
TGGCTTGCTA 1 9.40
GGCAGTGCCC 3 28.21
GTGGGTCGGA 1 9.40

Total number of rows: 28557

Table truncated, full table size 513 Kbytes.




Supplementary data files not provided

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