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Sample GSM25929 Query DataSets for GSM25929
Status Public on Jul 24, 2004
Title SAGE_CGAP_HR0 Swarm rat chondrosarcoma lung tumor
Sample type SAGE
Anchor NlaIII
Tag Count 108781
Tag Length 10
 
Source name mRAN from Swarm rat chondrosarcoma tumor line
Organism Rattus norvegicus
Extracted molecule total RNA
 
Description This library represents a Cancer Genome Anatomy Project libray, which was either produced through CGAP funding, or donated to CGAP.
The Cancer Genome Anatomy project (CGAP:http://cgap.nci.nih.gov) is an interdisplinary program established and administered by the National Cancer Institute (NCI:http://www.nci.nih.gov) to generate the information and technological tools needed to decipher the molecular anatomy of the cancer cell.
Swarm rat chondrosarcoma (SRC) tumor line JWS was grown subcutaneously for 21 days in Sprague-Dawely male rats. The subcutaneous Swarm rat chondrosarcoma JWS tumor was then harvested and transplanted into the proximal tibia of 8 week old male Sprague-Dawely rats. Forty-two days post tibia Swarm rat chondrosarcoma transplantation the rats were euthanized, and Swarm rat chondrosarcoma tumor was collected from the lungs. Swarm rat chondrosarcoma JWS lung tumors from five separate rats were pooled for RNA isolation and this RNA was used for the construction of the SAGE library HR0. Vector: pUC-18
R. Site1:Sma1
R. Site2:Sma1
Keywords = Swarm rat chondrosarcoma tumor
 
Submission date Jun 22, 2004
Last update date Nov 19, 2008
Contact name Thomas L. Casavant
E-mail(s) cbcb_ge@eng.uiowa.edu
Phone 319 335 6432
Fax 319 384 0944
URL http://genome.uiowa.edu
Organization name University of Iowa
Department Electrical & Computer Department
Lab CBCB Lab
Street address
City Iowa City
State/province IA
ZIP/Postal code 52242
Country USA
 
Platform ID GPL23
Series (1)
GSE1517 Rat Chondrosarcoma

Data table header descriptions
TAG
COUNT SAGE count tag
TPM tags per million

Data table
TAG COUNT TPM
GGACCGCTTC 6 55.16
CAAATCTGTA 3 27.58
CTCTTGTTGA 1 9.19
CCAACACTCA 1 9.19
AATTGCATTT 1 9.19
TGTATTGGCT 1 9.19
TTTGTGCTAG 1 9.19
GCATCATCGG 2 18.39
CCATAAAATT 1 9.19
AGACAACTAA 3 27.58
CCAGAATATG 2 18.39
GTCTGCTCTG 1 9.19
GTTTGGACAA 1 9.19
AGAGTCATCT 1 9.19
GCCCCGAATT 1 9.19
TTAGATATCA 5 45.96
AATAGGTCAG 1 9.19
GGCTACAACC 1 9.19
GCATCCCTGA 1 9.19
CCTCCCCAGC 1 9.19

Total number of rows: 42741

Table truncated, full table size 765 Kbytes.




Supplementary data files not provided

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