|
| Status |
Public on May 18, 2017 |
| Title |
saliva derived genomic DNA [SA020] |
| Sample type |
genomic |
| |
|
| Source name |
Oragene saliva
|
| Organism |
Homo sapiens |
| Characteristics |
gender: female
age: 69
batch: 1
european ancestry: 0.005959
bantu ancestry: 0.431747
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted from saliva sampled using Oragene kits by DNA Genotek using PrepIT reagent and a standard protocol
|
| Label |
Cy5 and Cy3
|
| Label protocol |
standard Illumina protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium HumanMethylation450 BeadChip using standard Illumina protocol
|
| Scan protocol |
chips were scanned using an Illumina iScan and recommended settings
|
| Description |
saliva sample
|
| Data processing |
Illumina GenomeStudio 2011.1 software
|
| |
|
| Submission date |
May 17, 2017 |
| Last update date |
May 18, 2017 |
| Contact name |
Shyamalika Gopalan |
| E-mail(s) |
shyamalika.gopalan@stonybrook.edu
|
| Organization name |
Stony Brook University
|
| Street address |
100 Nicolls Road
|
| City |
Stony Brook |
| ZIP/Postal code |
11794 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (2) |
| GSE99029 |
Genome-wide DNA methylation of ǂKhomani San |
| GSE99091 |
Genome-wide DNA methylation and SNP genotyping of ǂKhomani San |
|
